Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,847,995	G→T	S5* (TCG→TAG)	selD ←	selenide, water dikinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,847,995	0	G	T	100.0%	474.8 / NA	133	S5* (TCG→TAG)	selD	selenide, water dikinase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (57/76); total (57/76)

Only 100 of 136 total aligned reads displayed.

TCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATC  >  NC_000913/1847860‑1848126

  gcgGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTtct                                                                                                                               <  2:513221/140‑1 (MQ=255)

  gcgGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTtct                                                                                                                               <  1:2067456/140‑1 (MQ=255)

  gcgGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTtct                                                                                                                               <  2:2048997/140‑1 (MQ=255)

    gggTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCg                                                                                                                             <  2:2294727/140‑1 (MQ=255)

        ttCTTTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCa                                                                                                                         <  1:737756/140‑1 (MQ=255)

        ttCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCa                                                                                                                         <  1:2234670/140‑1 (MQ=255)

        ttCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCa                                                                                                                         <  2:1638196/140‑1 (MQ=255)

          cATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATg                                                                                                                       >  1:1041922/1‑140 (MQ=255)

          cATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATg                                                                                                                       <  1:1555060/140‑1 (MQ=255)

           aTTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATgg                                                                                                                      >  1:645309/1‑140 (MQ=255)

            ttACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGa                                                                                                                     <  1:368916/140‑1 (MQ=255)

            ttACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGa                                                                                                                     <  2:1760676/140‑1 (MQ=255)

             tACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGAc                                                                                                                    >  2:1601351/1‑140 (MQ=255)

                ccACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACAtc                                                                                                                 >  2:449746/1‑140 (MQ=255)

                 cacaAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTtct                                                                                                                               >  2:1161367/1‑125 (MQ=255)

                 cacaAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTtct                                                                                                                               <  1:1161367/125‑1 (MQ=255)

                  acaAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACAtct                                                                                                                <  2:1886985/139‑1 (MQ=255)

                  acaAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACAtct                                                                                                                >  1:1886985/1‑139 (MQ=255)

                    aaGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATg                                                                                                                       >  2:2159230/1‑130 (MQ=255)

                    aaGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATg                                                                                                                       <  1:2159230/130‑1 (MQ=255)

                    aaGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACAtct                                                                                                                <  1:716137/137‑1 (MQ=255)

                    aaGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACAtct                                                                                                                >  2:716137/1‑137 (MQ=255)

                    aaGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCt                                                                                                             >  1:1275985/1‑140 (MQ=255)

                    aaGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCt                                                                                                             >  2:2262210/1‑140 (MQ=255)

                    aaGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCt                                                                                                             >  2:118603/1‑140 (MQ=255)

                    aaGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCt                                                                                                             >  1:2237441/1‑140 (MQ=255)

                    aaGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCt                                                                                                             >  1:1361622/1‑140 (MQ=255)

                    aaGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCt                                                                                                             >  2:1049631/1‑140 (MQ=255)

                      gCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGt                                                                                                           <  1:1777722/140‑1 (MQ=255)

                          aTTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAAt                                                                                                       <  1:2338374/140‑1 (MQ=255)

                           ttCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATg                                                                                                      <  1:1319558/140‑1 (MQ=255)

                              ggATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCaa                                                                                                   <  2:1275985/140‑1 (MQ=255)

                                aTCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATc                                                                                                 >  1:1756122/1‑140 (MQ=255)

                                aTCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATc                                                                                                 >  1:2189835/1‑140 (MQ=255)

                                 tCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATcc                                                                                                <  1:1049631/140‑1 (MQ=255)

                                   aacaaACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCgg                                                                                              <  1:473716/140‑1 (MQ=255)

                                   aacaaACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTAGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCgg                                                                                              >  1:1910858/1‑140 (MQ=255)

                                    acaaACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCggg                                                                                             <  1:262390/140‑1 (MQ=255)

                                     caaACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGt                                                                                            >  1:1393344/1‑140 (MQ=255)

                                      aaaCTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTa                                                                                           <  2:1756122/140‑1 (MQ=255)

                                         cTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATgg                                                                                        <  1:1601351/140‑1 (MQ=255)

                                          ttCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGt                                                                                       <  1:2281315/140‑1 (MQ=255)

                                          ttCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGt                                                                                       <  1:1971766/140‑1 (MQ=255)

                                          ttCGCCTGCTCACTATGCAGGATGGTTGCCTTCACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGt                                                                                       <  2:1464902/140‑1 (MQ=255)

                                            cGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTaa                                                                                     >  1:290365/1‑140 (MQ=255)

                                             gCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAAc                                                                                    >  1:561251/1‑140 (MQ=255)

                                             gCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAAc                                                                                    >  2:1898686/1‑140 (MQ=255)

                                              ccTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAAcc                                                                                   <  1:1326769/140‑1 (MQ=255)

                                              ccTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAAcc                                                                                   >  2:1381279/1‑140 (MQ=255)

                                                      cTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTcc                                                                           <  2:14367/140‑1 (MQ=255)

                                                        aTGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGt                                                                         <  2:2030180/140‑1 (MQ=255)

                                                        aTGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGt                                                                         <  1:981235/140‑1 (MQ=255)

                                                         tGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTaa                                                                                     <  2:1120220/127‑1 (MQ=255)

                                                         tGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTaa                                                                                     >  1:1120220/1‑127 (MQ=255)

                                                          gCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGa                                                                       <  1:168122/140‑1 (MQ=255)

                                                          gCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGa                                                                       <  1:447211/140‑1 (MQ=255)

                                                          gCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGa                                                                       <  2:1445466/140‑1 (MQ=255)

                                                          gCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGa                                                                       <  2:560614/140‑1 (MQ=255)

                                                          gCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGa                                                                       <  1:978294/140‑1 (MQ=255)

                                                              gATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTg                                                                   <  1:1615106/140‑1 (MQ=255)

                                                              gATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTg                                                                   >  2:1662511/1‑140 (MQ=255)

                                                              gATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTg                                                                   <  1:1167298/140‑1 (MQ=255)

                                                              gATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTg                                                                   >  1:169288/1‑140 (MQ=255)

                                                              gATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTg                                                                   <  1:1452994/140‑1 (MQ=255)

                                                              gATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTg                                                                   <  2:290365/140‑1 (MQ=255)

                                                               aTGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGa                                                                  >  1:2357468/1‑140 (MQ=255)

                                                               aTGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGa                                                                  >  2:660898/1‑140 (MQ=255)

                                                                tGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGAt                                                                 <  2:2189835/140‑1 (MQ=255)

                                                                tGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCCCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGAt                                                                 <  2:2183591/140‑1 (MQ=255)

                                                                 ggTTTCCAACACTTTTGGGGAATTGTTACAGCCGCAACCATCACTGTGTCTGGGTTGGGTCATATGGATCTAGTTCTCGCTGAGGGACATCTCCTGTCAATGCAATCCGGGTATGGGAACCCTCATTCCGTTAACTGATa                                                                >  2:1975766/1‑140 (MQ=255)

                                                                 ggTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATa                                                                >  1:622162/1‑140 (MQ=255)

                                                                 ggTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATa                                                                >  1:428261/1‑140 (MQ=255)

                                                                   tttCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGa                                                                       >  1:1228171/1‑131 (MQ=255)

                                                                   tttCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGa                                                                       <  2:1228171/131‑1 (MQ=255)

                                                                   tttCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAg                                                              >  1:1213958/1‑140 (MQ=255)

                                                                   tttCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAg                                                              >  1:2126231/1‑140 (MQ=255)

                                                                     tCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGAt                                                                 <  2:1263403/135‑1 (MQ=255)

                                                                     tCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTg                                                            >  2:523856/1‑140 (MQ=255)

                                                                      ccaccaCTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTga                                                           >  2:1799530/1‑140 (MQ=255)

                                                                      ccAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTga                                                           <  2:330933/140‑1 (MQ=255)

                                                                       cAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTgag                                                          <  2:60769/140‑1 (MQ=255)

                                                                        aaCACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTg                                                                   <  1:1561154/130‑1 (MQ=255)

                                                                        aaCACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTgaga                                                         >  1:1048686/1‑140 (MQ=255)

                                                                        aaCACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTgaga                                                         <  2:1474695/140‑1 (MQ=255)

                                                                         acacTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGagag                                                        <  2:2357468/140‑1 (MQ=255)

                                                                               ttGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTg                                                                   <  1:626714/123‑1 (MQ=255)

                                                                               ttGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTg                                                                   >  2:626714/1‑123 (MQ=255)

                                                                                tGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGa                                                 <  2:428261/140‑1 (MQ=255)

                                                                                       aTTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTTCTg                                          <  1:1898686/140‑1 (MQ=255)

                                                                                       aTTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTg                                          <  2:1213958/140‑1 (MQ=255)

                                                                                             cAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCtt                                    <  2:622162/140‑1 (MQ=255)

                                                                                                  gCACCCAGCTCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGCTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTc                               <  1:1975766/140‑1 (MQ=255)

                                                                                                           tCCGTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAg                      >  1:2239151/1‑140 (MQ=255)

                                                                                                              gTGGCTGTATTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACa                   >  2:1455964/1‑140 (MQ=255)

                                                                                                                      aTTGGGTCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTcgcg           <  1:1680300/140‑1 (MQ=255)

                                                                                                                            tCAAACGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAAtt     >  2:1023225/1‑140 (MQ=255)

                                                                                                                               aaCGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATc  >  1:604309/1‑140 (MQ=255)

                                                                                                                               aaCGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATc  >  1:1615888/1‑140 (MQ=255)

                                                                                                                               aaCGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATc  >  2:401290/1‑140 (MQ=255)

                                                                                                                               aaCGAATCTAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATc  >  1:1192873/1‑140 (MQ=255)

TCGCGGGTTTCATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATC  >  NC_000913/1847860‑1848126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A