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Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC	NC_000913	2,067,354	Δ35,590 bp	between IS5	yoeA–insH‑7	41 genes yoeA, insD‑3, insC‑3, yoeA, yeeP, isrC, flu, yeeR, yeeS, yeeT, cbeA, cbtA, yeeW, yoeF, yeeX, yeeA, sbmC, dacD, sbcB, yeeD, yeeE, plaP, yoeI, yeeY, yeeZ, yoeB, yefM, hisL, hisG, hisD, hisC, hisB, hisH, hisA, hisF, hisI, wzzB, ugd, gnd, wbbL, insH‑7

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2066814–2067340	2102867–2101748	34409–36054	42 [36]	[40] 42	[insH‑6]–[insH‑7]	[insH‑6],yoeA,insD‑3,insC‑3,yoeA,yeeP,isrC,flu,yeeR,yeeS,yeeT,cbeA,cbtA,yeeW,yoeF,yeeX,yeeA,sbmC,dacD,sbcB,yeeD,yeeE,plaP,yoeI,yeeY,yeeZ,yoeB,yefM,hisL,hisG,hisD,hisC,hisB,hisH,hisA,hisF,hisI,wzzB,ugd,gnd,wbbL,[insH‑7]

GATK/CNVnator alignment

N/A