Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,810,197	A→G	Q194R (CAG→CGG)	ygaZ →	L‑valine exporter subunit YgaZ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,810,197	0	A	G	99.3%	491.9 / ‑4.8	137	Q194R (CAG→CGG)	ygaZ	L‑valine exporter subunit YgaZ
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (69/67); total (70/67)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01

Only 100 of 137 total aligned reads displayed.

ATGGTCATCGTGGGTATTTGGTACGGTAATAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCAGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTAATCCAGGCATTCTGGC  >  NC_000913/2810060‑2810331

aTGGTCATCGTGGGTATTTGGTACGGTAATAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGgc                                                                                                                                      >  1:436865/1‑140 (MQ=255)

aTGGTCATCGTGGGTATTTGGTACGGTAATAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGgc                                                                                                                                      >  1:2203741/1‑140 (MQ=255)

   gTCATCGTGGGTATTTGGTACGGTAATAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCa                                                                                                                                   <  1:943044/140‑1 (MQ=255)

     cATCGTGGGTATTTGGTACGGTAATAGGGGCATTCTCCGGCAGCGGCTCGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCaaa                                                                                                                                 >  1:505233/1‑140 (MQ=255)

       tCGTGGGTATTTGGTACGGTAATAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACa                                                                                                                               >  2:323158/1‑140 (MQ=255)

       tCGTGGGTATTTGGTACGGTAATAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACa                                                                                                                               >  1:481617/1‑140 (MQ=255)

       tCGTGGGTATTTGGTACGGTAATAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACa                                                                                                                               <  2:215915/140‑1 (MQ=255)

            ggTATTTGGTACGGTAATAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAAtttc                                                                                                                          >  2:2066593/1‑140 (MQ=255)

                      aCGGTAATAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTAc                                                                                                                >  2:2218185/1‑140 (MQ=255)

                        ggTAATAGGGGCATTCTCCGGCGGCGGTTTGCTGCAGGTTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCg                                                                                                              <  2:223718/140‑1 (MQ=255)

                        ggTAATAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCg                                                                                                              <  1:541208/140‑1 (MQ=255)

                         gTAATAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGc                                                                                                             <  1:91144/140‑1 (MQ=255)

                          tAATAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCtt                                                                                                                        <  1:1260543/128‑1 (MQ=255)

                          tAATAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCa                                                                                                            >  2:2338650/1‑140 (MQ=255)

                            aTAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGc                                                                                                          >  1:2247803/1‑140 (MQ=255)

                            aTAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCCGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGc                                                                                                          <  2:2116371/140‑1 (MQ=255)

                               ggggCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGtt                                                                                                       >  2:659792/1‑140 (MQ=255)

                               ggggCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGtt                                                                                                       <  2:481617/140‑1 (MQ=255)

                               ggggCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGtt                                                                                                       <  2:2100796/140‑1 (MQ=255)

                                  gCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGt                                                                                                    >  1:544519/1‑140 (MQ=255)

                                   cATTCTCCGGCAGCGACTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGtt                                                                                                   >  2:228673/1‑140 (MQ=255)

                                    aTTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTg                                                                                                  >  2:2125294/1‑140 (MQ=255)

                                    aTTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTg                                                                                                  >  1:1580734/1‑140 (MQ=255)

                                    aTTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTg                                                                                                  >  1:871628/1‑140 (MQ=255)

                                    aTTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTg                                                                                                  >  2:746181/1‑140 (MQ=255)

                                    aTTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTg                                                                                                  >  2:1630946/1‑140 (MQ=255)

                                    aTTCCCCGGCAGCGGTTTGCTGCAAGTTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTg                                                                                                  <  1:565779/140‑1 (MQ=255)

                                       ctcCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTg                                                                                               <  2:1580734/140‑1 (MQ=255)

                                        tcCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGc                                                                                              >  1:2339421/1‑140 (MQ=255)

                                        tcCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGc                                                                                              <  2:975959/140‑1 (MQ=255)

                                          cGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGccc                                                                                            >  2:712921/1‑140 (MQ=255)

                                              gggggtttGCTGCAAGTTTATCCCGCCGTTGAAGCTACATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGc                                                                                        <  2:1617498/134‑1 (MQ=255)

                                              ggCGGTTTGCTGAAAGTTTACCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGc                                                                                        <  2:1893497/139‑1 (MQ=255)

                                                cGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTg                                                                                               >  2:180924/1‑131 (MQ=255)

                                                cGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTg                                                                                               <  1:180924/131‑1 (MQ=255)

                                                cGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAg                                                                                      >  2:243275/1‑140 (MQ=255)

                                                cGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAg                                                                                      >  2:2216369/1‑140 (MQ=255)

                                                cGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAg                                                                                      >  2:1027352/1‑140 (MQ=255)

                                                  gCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGc                                                                                    >  1:1484941/1‑140 (MQ=255)

                                                     tgctgcAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTa                                                                                 <  1:1630946/140‑1 (MQ=255)

                                                       ctgcAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAAc                                                                               <  1:2125294/140‑1 (MQ=255)

                                                        tgcAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACg                                                                              <  2:2339421/140‑1 (MQ=255)

                                                        tgcAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACg                                                                              <  2:871628/140‑1 (MQ=255)

                                                        tgcAAGGTTACCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACg                                                                              <  2:1646412/140‑1 (MQ=255)

                                                          cAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCt                                                                            <  1:2216369/140‑1 (MQ=255)

                                                           aaGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTa                                                                           <  1:1254668/140‑1 (MQ=255)

                                                           aaGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTa                                                                           <  1:1762675/140‑1 (MQ=255)

                                                            aGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTAt                                                                          >  1:1925197/1‑140 (MQ=255)

                                                                 aTCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCt                                                                     >  2:1801492/1‑140 (MQ=255)

                                                                  tCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCg                                                                                   >  1:1736419/1‑125 (MQ=255)

                                                                  tCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCg                                                                                   <  2:1736419/125‑1 (MQ=255)

                                                                  tCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAAc                                                                               <  2:701828/129‑1 (MQ=255)

                                                                  tCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAAc                                                                               >  1:701828/1‑129 (MQ=255)

                                                                      gccgTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTcc                                                                <  2:1428596/140‑1 (MQ=255)

                                                                       ccgTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTa                                                                           >  2:1713165/1‑128 (MQ=255)

                                                                       ccgTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTa                                                                           <  1:1713165/128‑1 (MQ=255)

                                                                       ccgTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTccc                                                               >  1:947256/1‑140 (MQ=255)

                                                                        cgTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACg                                                                              <  2:919655/124‑1 (MQ=255)

                                                                           tGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTGTTCCCGTCg                                                           <  2:165758/140‑1 (MQ=255)

                                                                              aGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCa                                                        <  2:555819/140‑1 (MQ=255)

                                                                                cTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCAtt                                                      <  2:2333909/140‑1 (MQ=255)

                                                                                  gCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCt                                                    <  1:712921/140‑1 (MQ=255)

                                                                                    aTTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCa                                                        >  2:1709384/1‑134 (MQ=255)

                                                                                    aTTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCa                                                        <  1:1709384/134‑1 (MQ=255)

                                                                                    aTTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTgg                                                  <  2:313107/140‑1 (MQ=255)

                                                                                    aTTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTgg                                                  <  2:2247803/140‑1 (MQ=255)

                                                                                          ttttATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTggcaggca                                            <  2:1925197/140‑1 (MQ=255)

                                                                                          ttttATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTggcaggca                                            <  2:55151/140‑1 (MQ=255)

                                                                                          ttttATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTggcaggca                                            <  1:1630444/140‑1 (MQ=255)

                                                                                          ttttATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTggcaggca                                            <  2:947256/140‑1 (MQ=255)

                                                                                             tATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTggcaggca                                            <  2:2188343/137‑1 (MQ=255)

                                                                                             tATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTg                                         >  1:880833/1‑140 (MQ=255)

                                                                                             tATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTg                                         >  2:2405354/1‑140 (MQ=255)

                                                                                              aTGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGt                                        <  1:1274411/140‑1 (MQ=255)

                                                                                              aTGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGt                                        >  2:1825204/1‑140 (MQ=255)

                                                                                              aTGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGt                                        <  2:516418/140‑1 (MQ=255)

                                                                                               tGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTc                                       >  1:51987/1‑140 (MQ=255)

                                                                                               tGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTc                                       >  2:2371793/1‑140 (MQ=255)

                                                                                                  ttCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCtgt                                    >  1:1191874/1‑140 (MQ=255)

                                                                                                    ccGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTgg                                  >  1:760101/1‑140 (MQ=255)

                                                                                                            ctTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCa                          <  2:1484941/140‑1 (MQ=255)

                                                                                                            ctTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCa                          <  2:174859/140‑1 (MQ=255)

                                                                                                            ctTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCa                          <  2:1760613/140‑1 (MQ=255)

                                                                                                            ctTTATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCa                          <  1:348265/140‑1 (MQ=255)

                                                                                                             tttATGAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCAc                         <  2:1274236/140‑1 (MQ=255)

                                                                                                                  gAGTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGt                    <  1:1511973/140‑1 (MQ=255)

                                                                                                                    gTTTCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTa                  <  1:1825204/140‑1 (MQ=255)

                                                                                                                     tttCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCa                          >  2:797739/1‑131 (MQ=255)

                                                                                                                       tCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTAATc               >  1:1393700/1‑140 (MQ=255)

                                                                                                                       tCCTGCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTAATc               >  1:2367987/1‑140 (MQ=255)

                                                                                                                       tCCTGCTCGCCTCTTTCCAGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTAAtt               >  2:1271131/1‑139 (MQ=255)

                                                                                                                           gCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTAATCCAgg           <  2:1399314/140‑1 (MQ=255)

                                                                                                                           gCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTAATCCAgg           <  2:880833/140‑1 (MQ=255)

                                                                                                                           gCTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTAATCCAgg           <  2:1609709/140‑1 (MQ=255)

                                                                                                                            cTCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTT‑GTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTAATCCAGGCa         <  1:753001/140‑1 (MQ=255)

                                                                                                                             tCGCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTAATCCAGGCa         <  2:760101/140‑1 (MQ=255)

                                                                                                                               gCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTAATCCAGGCAtt       >  2:448432/1‑140 (MQ=255)

                                                                                                                               gCCTCTTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTAATCCAGGCAtt       <  1:472862/140‑1 (MQ=255)

                                                                                                                                 ctctTTCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTAATCCAGGCATTCt     >  1:1319338/1‑140 (MQ=255)

                                                                                                                                    tttCCGGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTAATCCAGGCATTCTGGc  <  1:267140/140‑1 (MQ=255)

ATGGTCATCGTGGGTATTTGGTACGGTAATAGGGGCATTCTCCGGCAGCGGCTTGCTGCAAGGTTATCCCGCCGTTGAAGCTGCATTAGGTTTTATGCTTCCGGCACTCTTTATGAGTTTCCTGCTCGCCTCTTTCCAGCGCAAACAATCTCTTTGCGTTACCGCAGCGTTAGTTGGTGCCCTTGCAGGCGTAACGCTATTTTCTATTCCCGTCGCCATTCTGGCAGGCATTGTCTGTGGCTGCCTCACTGCGTTAATCCAGGCATTCTGGC  >  NC_000913/2810060‑2810331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A