Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F28 I1 R1
|
258 |
142.3 |
4824480 |
99.1% |
4781059 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,818,784 |
T→C |
intergenic (‑139/+177) |
serV ← / ← csrA |
tRNA‑Ser/carbon storage regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,818,784 | 0 | T | C | 99.5%
| 691.5
/ NA
| 190 | intergenic (‑139/+177) | serV/csrA | tRNA‑Ser/carbon storage regulator |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (95/94); total (96/94) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 190 total aligned reads displayed.
GCCTCTTACGAGTGCTTCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGTCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGAAAAGACTATAGAGTGAAGGAGAAAT > NC_000913/2818650‑2818918
|
ctctTACGAGTGCTTCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTaaa > 2:1641283/1‑140 (MQ=255)
ctctTACGAGTGCTTCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTaaa > 1:632163/1‑140 (MQ=255)
tctTACGAGTGCTTCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTaaaa > 1:2226504/1‑140 (MQ=255)
tctTACGAGTGCTTCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTaaaa < 2:1758116/140‑1 (MQ=255)
tGCTTCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCaaaa > 1:1656453/1‑140 (MQ=255)
cTTCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAag > 1:617835/1‑140 (MQ=255)
cTTCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAag > 1:2172232/1‑140 (MQ=255)
cTTCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAag > 2:1969415/1‑140 (MQ=255)
cTTCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAag < 1:1415757/140‑1 (MQ=255)
cTTCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAag > 1:70967/1‑140 (MQ=255)
cTTCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAag > 1:208509/1‑140 (MQ=255)
ttCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAaga > 2:1562631/1‑140 (MQ=255)
tCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAagag < 1:883108/140‑1 (MQ=255)
cGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAgt > 1:1826303/1‑140 (MQ=255)
cGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAgt < 2:2093968/140‑1 (MQ=255)
aagaaCTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAgtgt > 2:772892/1‑140 (MQ=255)
gTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCaa < 2:632163/140‑1 (MQ=255)
gTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCaa > 1:2015006/1‑140 (MQ=255)
tATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACag < 1:785448/140‑1 (MQ=255)
tCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACagaa > 2:138435/1‑140 (MQ=255)
cTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAgaagaa > 2:1438667/1‑140 (MQ=255)
atagtcgCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATgg < 1:1966185/137‑1 (MQ=255)
aTCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATgg < 1:1007690/140‑1 (MQ=255)
aTCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATgg > 1:792771/1‑140 (MQ=255)
cgtcgCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAg < 1:2118976/140‑1 (MQ=255)
tcgCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTAt > 1:2095133/1‑122 (MQ=255)
cgCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTc < 2:33233/140‑1 (MQ=255)
gCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCt < 1:2363060/140‑1 (MQ=255)
cTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAA‑TTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGa < 1:1902369/140‑1 (MQ=255)
tGCGTGGCGCACATATTACTTTCTGATACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGa < 1:1685846/140‑1 (MQ=255)
tGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGa < 2:1428837/140‑1 (MQ=255)
tGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGa < 2:2226504/140‑1 (MQ=255)
tGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGa < 2:2244926/140‑1 (MQ=255)
tGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGa < 2:1349951/140‑1 (MQ=255)
tGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGa < 2:70967/140‑1 (MQ=255)
tGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGa < 1:1853139/140‑1 (MQ=255)
tGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGa < 1:2120936/140‑1 (MQ=255)
tGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGa < 2:606555/140‑1 (MQ=255)
cGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACa < 2:1454800/140‑1 (MQ=255)
cGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACa < 1:1438667/140‑1 (MQ=255)
cGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACa < 1:1562631/140‑1 (MQ=255)
cGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACa < 2:1350333/140‑1 (MQ=255)
cGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACa < 1:1969415/140‑1 (MQ=255)
tGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAAt < 2:68208/126‑1 (MQ=255)
tGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAAt > 1:68208/1‑126 (MQ=255)
tGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATgg > 2:2010130/1‑128 (MQ=255)
tGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGa > 1:844116/1‑140 (MQ=255)
tGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGa > 1:928132/1‑140 (MQ=255)
tGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGa > 1:2252573/1‑140 (MQ=255)
cgcACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGAtag > 1:171497/1‑140 (MQ=255)
atatTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGAtagtag < 2:227495/138‑1 (MQ=255)
atatTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGAtagtag > 1:227495/1‑138 (MQ=255)
atatTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAgtagta > 1:2309901/1‑140 (MQ=255)
atTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAAt > 2:2148214/1‑140 (MQ=255)
aCTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCa < 2:1656453/140‑1 (MQ=255)
tCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCaaaaa > 2:451198/1‑140 (MQ=255)
cTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGAt < 1:905190/123‑1 (MQ=255)
cTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCaaaaaa > 1:1605860/1‑140 (MQ=255)
cTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCaaaaaa > 2:273263/1‑140 (MQ=255)
cTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCaaaaaa > 2:2120255/1‑140 (MQ=255)
cTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCa > 2:593321/1‑135 (MQ=255)
tGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCaaaaaaa > 1:334860/1‑140 (MQ=255)
agaCTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATg < 2:2172232/140‑1 (MQ=255)
agaCTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATg < 1:2193830/140‑1 (MQ=255)
agaCTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATg < 1:138435/140‑1 (MQ=255)
agaCTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATg < 1:118849/140‑1 (MQ=255)
aCTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGga < 1:451198/140‑1 (MQ=255)
ataAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACt > 2:458313/1‑140 (MQ=255)
cAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGtt < 1:1815637/140‑1 (MQ=255)
cAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGtt > 2:1084322/1‑140 (MQ=255)
aaCAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATg > 1:1154906/1‑126 (MQ=255)
aaCAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATg < 2:1154906/126‑1 (MQ=255)
aaCAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTtga > 2:250844/1‑140 (MQ=255)
aaCAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTtga > 2:1620291/1‑140 (MQ=255)
aaCAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTtga > 1:772792/1‑140 (MQ=255)
aCAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTtgaa < 2:832919/140‑1 (MQ=255)
ttttCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAAc < 1:1084322/140‑1 (MQ=255)
ttttATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGc < 1:381431/140‑1 (MQ=255)
ttATCGTTTGCACACTTCACGTTCAATTAGTCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGa > 1:265282/1‑140 (MQ=255)
ttATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGa < 2:89249/140‑1 (MQ=255)
ttATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGa < 1:1020213/140‑1 (MQ=255)
ttATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGa < 1:1348200/140‑1 (MQ=255)
ttATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGa < 1:1563485/140‑1 (MQ=255)
ttATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGa > 1:2156218/1‑140 (MQ=255)
ttATCGTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGa > 1:2175002/1‑140 (MQ=255)
gTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGAAAAGa < 2:2254591/140‑1 (MQ=255)
gTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGAAAAGa > 1:2111463/1‑140 (MQ=255)
gTTTGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGAAAAGa < 2:171497/140‑1 (MQ=255)
tttGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGaaa > 1:322709/1‑136 (MQ=255)
tGCACACTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGAAAAGACta > 2:623564/1‑140 (MQ=255)
cacaCTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGaaa > 1:49734/1‑132 (MQ=255)
cacaCTTCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGAAAAGACtata > 2:173846/1‑140 (MQ=255)
ttCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGAAAAGACTATAGAGTg > 2:2103063/1‑140 (MQ=255)
tCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGAAAAGACTATag > 1:601003/1‑135 (MQ=255)
tCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGAAAAGACTATAGAGTg > 2:1197846/1‑139 (MQ=255)
tCACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGAAAAGACTATAGAGTg < 1:1197846/139‑1 (MQ=255)
cACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAGCGGGAGTAAAGCGAAAAGa > 2:922055/1‑128 (MQ=255)
cACGTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGAAAAGACTATAGAGTGaa > 2:1261979/1‑140 (MQ=255)
gTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGAAAAGACTATAGAGTGAAGga < 1:2103063/140‑1 (MQ=255)
gTTCAATTAGCCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGAAAAGACTATAGAGTGAAGga > 2:793399/1‑140 (MQ=255)
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GCCTCTTACGAGTGCTTCGAAGAACTTGTTTATCGCTCATCGTCGCTGCGTGGCGCACATATTACTTTCTGAGACTTATAAGTCAAACAATTTTTCCTACACTTTTATCGTTTGCACACTTCACGTTCAATTAGTCTGTAAAAACGTCAAAAAGAGTGTTTTATCAACAGAAGAATGGAGGTCTGACAGATAGTAGTAATGCAAAAAAATGGAGACTTAAGTTGAATGAACGGGAGTAAAGCGAAAAGACTATAGAGTGAAGGAGAAAT > NC_000913/2818650‑2818918
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
