Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,821,137 G→A A292V (GCG→GTG)  alaS ← alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,821,1370GA100.0% 595.5 / NA 169A292V (GCG→GTG) alaSalanine‑‑tRNA ligase/DNA‑binding transcriptional repressor
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (93/76);  total (93/76)

Only 100 of 175 total aligned reads displayed.

GCGGACCAACCAGTTTGTAGAAGAAGGTTTCTTTCGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACGCACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCATAGTTAGAGTTAACGTGTTGCAGCAC  >  NC_000913/2821000‑2821273
                                                                                                                                         |                                                                                                                                        
gCGGACCAACCAGTTTGTAGAAGAAGGTTTCTTTCGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAAcaca                                                                                                                                        >  1:2000290/1‑140 (MQ=255)
 cGGACCAACCAGTTTGTAGAAGAAGGTTTCTTTCGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAacacac                                                                                                                                       <  2:2075827/140‑1 (MQ=255)
            gTTTGTAGAAGAAGGTTTCTTTCGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAAtg                                                                                                                            <  2:2304487/140‑1 (MQ=255)
                gTAGAAGAAGGTTTCTTTCGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGt                                                                                                                        >  1:1032052/1‑140 (MQ=255)
                gTAGAAGAAGGTTTCTTTCGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGt                                                                                                                        <  1:603676/140‑1 (MQ=255)
                       aagGTTTCTTTCGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTc                                                                                                                       <  1:483933/134‑1 (MQ=255)
                       aagGTTTCTTTCGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGAt                                                                                                                 >  1:1473510/1‑140 (MQ=255)
                       aagGTTTCTTTCGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGAt                                                                                                                 >  1:1883474/1‑140 (MQ=255)
                           tttctttcGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTAcg                                                                                                             <  2:2110014/140‑1 (MQ=255)
                           tttctttcGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTAcg                                                                                                             <  2:2262911/140‑1 (MQ=255)
                           tttctttcGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTAcg                                                                                                             >  1:230732/1‑140 (MQ=255)
                              ctttcGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACgcgc                                                                                                          >  2:2165962/1‑140 (MQ=255)
                              ctttcGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACgcgc                                                                                                          >  2:1520695/1‑140 (MQ=255)
                                ttcGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAg                                                                                                        <  2:1215555/140‑1 (MQ=255)
                                         aGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTAtt                                                                                               >  1:2128487/1‑140 (MQ=255)
                                                tACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGa                                                                                        <  2:1192778/140‑1 (MQ=255)
                                                   cGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCg                                                                                     >  2:1987274/1‑140 (MQ=255)
                                                   cGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTAAGATCg                                                                                     >  2:458737/1‑140 (MQ=255)
                                                     tGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGt                                                                                   >  1:811766/1‑140 (MQ=255)
                                                     tGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGt                                                                                   >  1:378419/1‑140 (MQ=255)
                                                     tGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGt                                                                                   <  1:2409047/140‑1 (MQ=255)
                                                     tGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGt                                                                                   <  2:378419/140‑1 (MQ=255)
                                                      gACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGtt                                                                                  <  2:1457405/140‑1 (MQ=255)
                                                       aCGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGa                                                                                        <  2:826940/133‑1 (MQ=255)
                                                        cGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTgc                                                                                >  1:1622783/1‑140 (MQ=255)
                                                        cGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTgc                                                                                >  1:1182610/1‑140 (MQ=255)
                                                          cACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTgcgc                                                                              >  2:2410701/1‑140 (MQ=255)
                                                          cACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACAGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTgcgc                                                                              >  2:1711368/1‑140 (MQ=255)
                                                              gcgcGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGt                                                                          >  2:2094891/1‑140 (MQ=255)
                                                               cgcgACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTg                                                                         <  2:230732/140‑1 (MQ=255)
                                                               cgcgACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTg                                                                         >  2:1577854/1‑140 (MQ=255)
                                                               cgcgACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTg                                                                         <  1:1763895/140‑1 (MQ=255)
                                                                        tGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCt                                                                <  1:203364/140‑1 (MQ=255)
                                                                         gATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTa                                                               <  1:715767/140‑1 (MQ=255)
                                                                                cgCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTg                                                        >  2:1323204/1‑140 (MQ=255)
                                                                                  cAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGa                                                      <  2:271819/140‑1 (MQ=255)
                                                                                   aGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGAt                                                     <  2:1006568/140‑1 (MQ=255)
                                                                                   aGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGAt                                                     >  2:1311513/1‑140 (MQ=255)
                                                                                   aGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGAt                                                     >  2:2036090/1‑140 (MQ=255)
                                                                                     tACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCa                                                   >  1:1165622/1‑140 (MQ=255)
                                                                                     tACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCa                                                   >  2:715196/1‑140 (MQ=255)
                                                                                     tACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCa                                                   >  2:1493801/1‑140 (MQ=255)
                                                                                          aaCCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCt                                                                <  1:291779/122‑1 (MQ=255)
                                                                                          aaCCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTg                                              <  2:1814149/140‑1 (MQ=255)
                                                                                          aaCCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTg                                              >  1:754910/1‑140 (MQ=255)
                                                                                          aaCCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTg                                              <  1:2087706/140‑1 (MQ=255)
                                                                                             cACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCg                                                            <  2:1641421/123‑1 (MQ=255)
                                                                                             cACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCg                                                            >  1:1641421/1‑123 (MQ=255)
                                                                                               cGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGc                                                           <  2:497549/122‑1 (MQ=255)
                                                                                               cGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGc                                                           >  1:497549/1‑122 (MQ=255)
                                                                                               cGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGaa                                         >  1:865988/1‑140 (MQ=255)
                                                                                               cGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGaa                                         >  1:1760767/1‑140 (MQ=255)
                                                                                               cGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGaa                                         >  2:467693/1‑140 (MQ=255)
                                                                                               cGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGaa                                         >  2:1938710/1‑140 (MQ=255)
                                                                                               cGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGaa                                         >  1:2259631/1‑140 (MQ=255)
                                                                                               cGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGaa                                         >  2:1249016/1‑140 (MQ=255)
                                                                                               cGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGaa                                         >  1:699235/1‑140 (MQ=255)
                                                                                               cGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGaa                                         >  1:1046024/1‑140 (MQ=255)
                                                                                               cGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGaa                                         >  2:558500/1‑140 (MQ=255)
                                                                                               cGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGaa                                         >  1:97484/1‑140 (MQ=255)
                                                                                               cGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGaa                                         >  1:962187/1‑140 (MQ=255)
                                                                                                ggTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAAc                                        <  2:2008750/140‑1 (MQ=255)
                                                                                                 gTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGTGGAACa                                       >  2:2328956/1‑140 (MQ=255)
                                                                                                 gTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACa                                       >  1:869/1‑140 (MQ=255)
                                                                                                 gTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACa                                       >  1:170938/1‑140 (MQ=255)
                                                                                                 gTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACa                                       >  2:155851/1‑140 (MQ=255)
                                                                                                    ttCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGt                                    >  2:1476194/1‑140 (MQ=255)
                                                                                                    ttCATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGt                                    <  1:1987274/140‑1 (MQ=255)
                                                                                                      cATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCg                                  <  2:754910/140‑1 (MQ=255)
                                                                                                      cATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCg                                  <  1:1249016/140‑1 (MQ=255)
                                                                                                      cATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCg                                  <  1:715196/140‑1 (MQ=255)
                                                                                                      cATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCg                                  <  2:1102468/140‑1 (MQ=255)
                                                                                                      cATTGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCg                                  <  1:1106007/140‑1 (MQ=255)
                                                                                                        ttGGACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGAt                                <  2:869/140‑1 (MQ=255)
                                                                                                          ggACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGt                              <  1:1436323/140‑1 (MQ=255)
                                                                                                          ggACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGt                              >  2:2221767/1‑140 (MQ=255)
                                                                                                          ggACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGt                              <  1:1493801/140‑1 (MQ=255)
                                                                                                          ggACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGt                              <  1:1672089/140‑1 (MQ=255)
                                                                                                           gACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAAGAGGTCGATGTc                             <  1:1577854/140‑1 (MQ=255)
                                                                                                           gACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTc                             <  2:1182610/140‑1 (MQ=255)
                                                                                                           gACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTc                             <  1:1030063/140‑1 (MQ=255)
                                                                                                           gACGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTc                             <  1:2165962/140‑1 (MQ=255)
                                                                                                            aCGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAAc                                        >  1:2196103/1‑128 (MQ=255)
                                                                                                            aCGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAAc                                        <  2:2196103/128‑1 (MQ=255)
                                                                                                            aCGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCa                            <  2:2162377/140‑1 (MQ=255)
                                                                                                            aCGGCATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCa                            <  2:703490/140‑1 (MQ=255)
                                                                                                                cATTACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCATAGt                        >  1:1962796/1‑140 (MQ=255)
                                                                                                                  ttACGCCATCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGTTGTCATAGTTa                      <  2:367386/140‑1 (MQ=255)
                                                                                                                         aTCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGCCTTTCGCTCCCGCCTGGATCAGCGTGTGGAACAGGTCGATGTCATAGTTAGAGTTaa               <  1:2328956/140‑1 (MQ=255)
                                                                                                                          tCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCATAGTTAGAGTTAAc              >  1:184996/1‑140 (MQ=255)
                                                                                                                          tCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCATAGTTAGAGTTAAc              >  1:949067/1‑140 (MQ=255)
                                                                                                                          tCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCATAGTTAGAGTTAAc              >  2:611893/1‑140 (MQ=255)
                                                                                                                          tCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCATAGTTAGAGTTAAc              >  2:61469/1‑140 (MQ=255)
                                                                                                                          tCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCATAGTTAGAGTTAAc              >  2:280180/1‑140 (MQ=255)
                                                                                                                          tCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCATAGTTAGAGTTAAc              >  2:794631/1‑140 (MQ=255)
                                                                                                                          tCCGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCATAGTTAGAGTTAAc              >  1:1328407/1‑140 (MQ=255)
                                                                                                                           ccGCGATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCATAGTTAGAGTTAACg             <  2:1046024/140‑1 (MQ=255)
                                                                                                                              cgATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCATAGTTAGAGTTAACgtgt          >  2:2239060/1‑140 (MQ=255)
                                                                                                                              cgATCAGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCATAGTTAGAGTTAACgtgt          <  1:2221767/140‑1 (MQ=255)
                                                                                                                                   aGGAACACACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCATAGTTAGAGTTAACGTGTTgcag     <  1:2094891/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
GCGGACCAACCAGTTTGTAGAAGAAGGTTTCTTTCGCGCCGAGCATATTACCGTGACGCACTGCGCGACGAATGATACGACGCAGTACATAACCACGGTTTTCATTGGACGGCATTACGCCATCCGCGATCAGGAACGCACAAGAACGAATGTGGTCAGCGATTACGCGCAGCGATTTATTGCTCAGATCGGTTGCGCCAGTGACTTTCGCTACCGCCTGGATCAGCGTGCGGAACAGGTCGATGTCATAGTTAGAGTTAACGTGTTGCAGCAC  >  NC_000913/2821000‑2821273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A