Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,839,090 T→C T59A (ACT→GCT)  ascG ← DNA‑binding transcriptional repressor AscG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,839,0900TC100.0% 551.7 / NA 154T59A (ACT→GCT) ascGDNA‑binding transcriptional repressor AscG
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (85/69);  total (85/69)

Only 100 of 154 total aligned reads displayed.

TTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGTACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCGCTTTTGA  >  NC_000913/2838953‑2839225
                                                                                                                                         |                                                                                                                                       
ttctGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCAc                                                                                                                                       <  1:1569778/140‑1 (MQ=255)
  ctGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCActc                                                                                                                                     >  1:1066915/1‑140 (MQ=255)
     cgcTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTc                                                                                                                                  >  2:2246618/1‑140 (MQ=255)
       cTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGc                                                                                                                                >  2:120298/1‑140 (MQ=255)
          tgtTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGa                                                                                                                             >  1:807860/1‑140 (MQ=255)
            tttACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACa                                                                                                                           <  2:1098583/140‑1 (MQ=255)
                    cTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTgcgc                                                                                                                   >  1:2178884/1‑140 (MQ=255)
                    cTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTgcgc                                                                                                                   >  1:249562/1‑140 (MQ=255)
                    cTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTgcgc                                                                                                                   >  2:2207058/1‑140 (MQ=255)
                    cTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTgcgc                                                                                                                   >  2:1562561/1‑140 (MQ=255)
                    cTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTgcgc                                                                                                                   >  1:544043/1‑140 (MQ=255)
                    cTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTgcgc                                                                                                                   >  1:1162103/1‑140 (MQ=255)
                    cTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTgcgc                                                                                                                   <  2:1123874/140‑1 (MQ=255)
                     tGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTgcgcg                                                                                                                  <  2:40981/140‑1 (MQ=255)
                      gCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTgcgcgc                                                                                                                 >  2:1465478/1‑140 (MQ=255)
                      gCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTgcgcgc                                                                                                                 >  2:224776/1‑140 (MQ=255)
                      gCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTgcgcgc                                                                                                                 <  1:406721/140‑1 (MQ=255)
                      gCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTgcgcgc                                                                                                                 >  2:849693/1‑140 (MQ=255)
                       ccAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGcc                                                                                                                >  1:2265058/1‑140 (MQ=255)
                         aaTAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAg                                                                                                              <  1:1231757/140‑1 (MQ=255)
                               aaCTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGtt                                                                                                        >  1:1612788/1‑140 (MQ=255)
                                 cTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTg                                                                                                      >  1:1255744/1‑140 (MQ=255)
                                 cTGCCGCCCTTTCTCTTCCGCCATTCGCGCAGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTg                                                                                                      >  2:1872018/1‑140 (MQ=255)
                                          tttCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAAc                                                                                             <  1:61451/140‑1 (MQ=255)
                                          tttCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAAc                                                                                             >  1:521398/1‑140 (MQ=255)
                                            tctcTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCg                                                                                           <  1:378443/140‑1 (MQ=255)
                                            tctcTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCg                                                                                           <  1:224776/140‑1 (MQ=255)
                                            tctcTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCg                                                                                           <  2:1767028/140‑1 (MQ=255)
                                            tctcTTCCGCAATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCg                                                                                           <  1:2246618/140‑1 (MQ=255)
                                              tctTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGct                                                                                         <  2:2358174/140‑1 (MQ=255)
                                                     ccATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGc                                                                                          >  1:1015362/1‑132 (MQ=255)
                                                     ccATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCtcttct                                                                                  <  2:521398/140‑1 (MQ=255)
                                                      cATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTa                                                                                 >  1:2398759/1‑140 (MQ=255)
                                                       aTTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTAc                                                                                <  2:807860/140‑1 (MQ=255)
                                                        ttCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTAcc                                                                               >  1:1603445/1‑140 (MQ=255)
                                                        ttCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTAcc                                                                               >  1:1458731/1‑140 (MQ=255)
                                                            cgcgGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCt                                                                           >  1:1512765/1‑140 (MQ=255)
                                                                    gAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACAcg                                                                   <  2:1255744/140‑1 (MQ=255)
                                                                    gAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACAcg                                                                   <  2:1512765/140‑1 (MQ=255)
                                                                     aaaGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACAcgc                                                                  <  2:66979/140‑1 (MQ=255)
                                                                     aaaGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACAcgc                                                                  <  2:1458731/140‑1 (MQ=255)
                                                                     aaaGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACAcgc                                                                  <  1:139654/140‑1 (MQ=255)
                                                                      aaGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACAcgcg                                                                 <  1:290339/140‑1 (MQ=255)
                                                                      aaGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACAcgcg                                                                 <  2:1603445/140‑1 (MQ=255)
                                                                           tAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCtt                                                            >  1:1972132/1‑140 (MQ=255)
                                                                           tAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCtt                                                            >  2:332827/1‑140 (MQ=255)
                                                                           tAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCtt                                                            >  1:1557068/1‑140 (MQ=255)
                                                                           tAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCtt                                                            >  1:487006/1‑140 (MQ=255)
                                                                           tAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCtt                                                            >  1:35881/1‑140 (MQ=255)
                                                                           tAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCtt                                                            >  2:1810354/1‑140 (MQ=255)
                                                                            aaTTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCttt                                                           >  1:1754723/1‑140 (MQ=255)
                                                                              ttCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACAcg                                                                   >  2:1927797/1‑130 (MQ=255)
                                                                              ttCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACAcg                                                                   <  1:1927797/130‑1 (MQ=255)
                                                                                   tAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTcc                                                    >  2:171168/1‑140 (MQ=255)
                                                                                   tAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTcc                                                    >  1:1020831/1‑140 (MQ=255)
                                                                                     aaataaatGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTg                                                  >  1:1691683/1‑140 (MQ=255)
                                                                                     aaataaatGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTg                                                  >  1:1305734/1‑140 (MQ=255)
                                                                                      aataaatGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTgg                                                 <  2:35881/140‑1 (MQ=255)
                                                                                       ataaatGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGc                                                <  2:1691683/140‑1 (MQ=255)
                                                                                       ataaatGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGc                                                <  2:487006/140‑1 (MQ=255)
                                                                                            tGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACg                                           <  1:1872018/140‑1 (MQ=255)
                                                                                              ccGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTa                                         <  2:2178884/140‑1 (MQ=255)
                                                                                                 tGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGcc                                      >  2:600872/1‑140 (MQ=255)
                                                                                                 tGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGcc                                      >  2:2325932/1‑140 (MQ=255)
                                                                                                  ggTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCa                                     <  2:531010/140‑1 (MQ=255)
                                                                                                  ggTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCa                                     <  1:1219077/140‑1 (MQ=255)
                                                                                                  ggTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCa                                     <  2:168351/140‑1 (MQ=255)
                                                                                                  ggTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCa                                     <  1:1810354/140‑1 (MQ=255)
                                                                                                   gTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCCTTAGTCTCCTGGCTGACGTAGCCAt                                    >  1:2789/1‑140 (MQ=255)
                                                                                                    tAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCAtt                                   <  2:1020831/140‑1 (MQ=255)
                                                                                                           tgtTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGaa                            >  1:650749/1‑140 (MQ=255)
                                                                                                           tgtTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGaa                            >  1:927209/1‑140 (MQ=255)
                                                                                                           tgtTGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGaa                            >  1:110090/1‑140 (MQ=255)
                                                                                                             ttGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAg                          >  1:1382566/1‑140 (MQ=255)
                                                                                                             ttGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAg                          <  2:679813/140‑1 (MQ=255)
                                                                                                             ttGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAg                          <  2:249562/140‑1 (MQ=255)
                                                                                                             ttGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAg                          >  1:1132568/1‑140 (MQ=255)
                                                                                                             ttGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAg                          >  2:1161199/1‑140 (MQ=255)
                                                                                                             ttGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAg                          <  1:1835146/140‑1 (MQ=255)
                                                                                                             ttGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAg                          <  2:1162103/140‑1 (MQ=255)
                                                                                                             ttGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAg                          <  2:1363367/140‑1 (MQ=255)
                                                                                                             ttGGTCACTACCAGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAg                          >  1:512863/1‑140 (MQ=255)
                                                                                                                    ctactaGCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCgg                   >  1:2262852/1‑140 (MQ=255)
                                                                                                                          gCCCCAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACg             >  2:1216800/1‑140 (MQ=255)
                                                                                                                            cccAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGt           <  1:1548459/140‑1 (MQ=255)
                                                                                                                            cccAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGt           <  1:849693/140‑1 (MQ=255)
                                                                                                                             ccAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTc          <  1:544639/140‑1 (MQ=255)
                                                                                                                              cAGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCg         <  1:2224919/140‑1 (MQ=255)
                                                                                                                               aGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCGc        >  2:1063847/1‑140 (MQ=255)
                                                                                                                               aGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCGc        >  2:2039522/1‑140 (MQ=255)
                                                                                                                               aGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCGc        >  2:487642/1‑140 (MQ=255)
                                                                                                                               aGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCGc        >  2:153414/1‑140 (MQ=255)
                                                                                                                               aGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCGc        >  2:262559/1‑140 (MQ=255)
                                                                                                                               aGCGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCGc        >  1:1564089/1‑140 (MQ=255)
                                                                                                                                 cGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCGCtt      >  1:1532980/1‑140 (MQ=255)
                                                                                                                                 cGTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCGCtt      >  2:1828527/1‑140 (MQ=255)
                                                                                                                                  gTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCGCttt     >  1:455187/1‑140 (MQ=255)
                                                                                                                                  gTCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCGCttt     <  2:650749/140‑1 (MQ=255)
                                                                                                                                   tCTGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCGCtttt    >  2:1273658/1‑140 (MQ=255)
                                                                                                                                     tGAGCACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCGCTTTTGa  >  2:728003/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
TTCTGCGCTGTGTTTACCATCTGCCAATAGCAACTGCCGCCCTTTCTCTTCCGCCATTCGCGCGGCATGAAAGAGTAATTCACTAAAATAAATGCCGTGGTAAAGCGTGTTGGTCACTACCAGCCCCAGCGTCTGAGTACTCTTCGCCGACAGATTGCGCGCCAGCAAGTTTGGACGGTAACCGCTCTCTTCTACCGCCTGAAACACGCGATCTTTAGTCTCCTGGCTGACGTAGCCATTACCTGAAAGCACGCGGGAAACGGTCGCTTTTGA  >  NC_000913/2838953‑2839225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A