Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F28 I1 R1
|
258 |
142.3 |
4824480 |
99.1% |
4781059 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,131,341 |
Δ191 bp |
IS5‑mediated |
yghQ ← |
putative transport protein YghQ |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3130227–3131345 |
3131531 |
187–1305 |
43 [38] |
[0] 123 |
[insH‑9]–[yghQ] |
[insH‑9],[yghQ] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
2288919 = | NA (NA) | 123 (0.870) |
69/274 |
0.4 |
100% |
noncoding (1195/1195 nt) |
IS5 |
repeat region |
| ? | NC_000913 |
3131532 = |
0 (0.000) | coding (877/1068 nt) |
yghQ |
putative transport protein YghQ |
GATK/CNVnator alignment
N/A
