Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,257,649	A→G	V121A (GTA→GCA)	cyuP ←	putative D/L‑serine transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,257,649	0	A	G	100.0%	648.8 / NA	180	V121A (GTA→GCA)	cyuP	putative D/L‑serine transporter
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (83/97); total (83/97)

Only 100 of 182 total aligned reads displayed.

CCAGAATGCAAATCAGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCGGGT  >  NC_000913/3257512‑3257784

ccaGAATGCAAATCAGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCg                                                                                                                                       >  1:1068395/1‑140 (MQ=255)

 caGAATGCAAATCAGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGa                                                                                                                                      >  1:1923686/1‑140 (MQ=255)

   gAATGCAAATCAGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGaaa                                                                                                                                    >  1:1032890/1‑140 (MQ=255)

       gCAAATCAGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATaga                                                                                                                                <  2:1577038/140‑1 (MQ=255)

       gCAAATCAGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATaga                                                                                                                                <  2:823371/140‑1 (MQ=255)

        cAAATCAGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATagag                                                                                                                               <  2:1582393/140‑1 (MQ=255)

          aaTCAGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAgcg                                                                                                                             <  2:1923686/140‑1 (MQ=255)

          aaTCAGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAgcg                                                                                                                             <  1:892758/140‑1 (MQ=255)

          aaTCAGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAgcg                                                                                                                             <  1:2046423/140‑1 (MQ=255)

           aTCAGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCCCTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAgcgc                                                                                                                            <  1:940269/140‑1 (MQ=255)

              aGTACCAGACTATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGCAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCAcc                                                                                                                         <  1:2226115/140‑1 (MQ=255)

              aGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCAcc                                                                                                                         >  2:2011592/1‑140 (MQ=255)

               gTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCt                                                                                                                        <  1:2011592/140‑1 (MQ=255)

                tACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTa                                                                                                                       >  2:329015/1‑140 (MQ=255)

                tACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTa                                                                                                                       >  1:317118/1‑140 (MQ=255)

                     gACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCGTTGCGAAATAGAGCGCACCTAACAgg                                                                                                                  >  2:2131268/1‑140 (MQ=255)

                     gACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAgg                                                                                                                  >  2:1332018/1‑140 (MQ=255)

                      aCCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGa                                                                                                                 >  1:416791/1‑140 (MQ=255)

                      aCCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGa                                                                                                                 <  2:1392030/140‑1 (MQ=255)

                        cATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATg                                                                                                               >  1:811359/1‑140 (MQ=255)

                          tAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGcc                                                                                                             >  2:1229197/1‑140 (MQ=255)

                          tAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGcc                                                                                                             >  2:807442/1‑140 (MQ=255)

                           aaaaGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGccc                                                                                                            <  1:1229197/140‑1 (MQ=255)

                                  aCTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGtttt                                                                                                     >  2:782740/1‑140 (MQ=255)

                                  aCTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGtttt                                                                                                     >  2:2029796/1‑140 (MQ=255)

                                   cTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGttttt                                                                                                    <  2:222948/140‑1 (MQ=255)

                                    tGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTa                                                                                                   >  2:669913/1‑140 (MQ=255)

                                    tGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTa                                                                                                   >  1:1986542/1‑140 (MQ=255)

                                      tCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTAcc                                                                                                 <  1:1844968/140‑1 (MQ=255)

                                      tCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTAcc                                                                                                 >  2:1223189/1‑140 (MQ=255)

                                                aCCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCg                                                                                       >  1:585548/1‑140 (MQ=255)

                                                aCCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCg                                                                                       >  1:2064407/1‑140 (MQ=255)

                                                aCCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCg                                                                                       >  2:461197/1‑140 (MQ=255)

                                                aCCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCg                                                                                       >  1:1980272/1‑140 (MQ=255)

                                                aCCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCg                                                                                       >  2:1899651/1‑140 (MQ=255)

                                                aCCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACAACCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCg                                                                                       >  2:1522751/1‑140 (MQ=255)

                                                 cccTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGc                                                                                      >  2:388347/1‑140 (MQ=255)

                                                  ccTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCt                                                                                     >  1:120852/1‑140 (MQ=255)

                                                     tCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAAt                                                                                  >  1:466129/1‑140 (MQ=255)

                                                     tCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAAt                                                                                  >  2:695143/1‑140 (MQ=255)

                                                     tCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAAt                                                                                  >  1:2253399/1‑140 (MQ=255)

                                                         tCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACg                                                                              <  2:585548/140‑1 (MQ=255)

                                                         tCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACg                                                                              <  2:1705202/140‑1 (MQ=255)

                                                         tCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACg                                                                              <  1:744245/140‑1 (MQ=255)

                                                         tCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACg                                                                              <  1:2131268/140‑1 (MQ=255)

                                                            cGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTc                                                                           >  2:1865797/1‑140 (MQ=255)

                                                            cGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATACAGGAACATCCAAATCACCAACATTGCGAAAGAGAGCGCACCTAACAGGAAGGCCCCGGTTTTACCTAAAAAAACAATAAAAACGCTc                                                                           >  2:1204012/1‑140 (MQ=255)

                                                                gAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGt                                                                       <  2:1183359/140‑1 (MQ=255)

                                                                 aaGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTa                                                                      <  1:1592331/140‑1 (MQ=255)

                                                                 aaGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTa                                                                      <  2:581590/140‑1 (MQ=255)

                                                                  aGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTaa                                                                     <  1:492816/140‑1 (MQ=255)

                                                                  aGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTaa                                                                     <  1:2366204/140‑1 (MQ=255)

                                                                  aGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACACTCGGGTaa                                                                     <  1:1806681/140‑1 (MQ=255)

                                                                     tATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCt                                                                  <  1:1353554/140‑1 (MQ=255)

                                                                       tGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCgg                                                                         >  1:68335/1‑131 (MQ=255)

                                                                       tGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCttt                                                                <  1:2173123/140‑1 (MQ=255)

                                                                       tGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCttt                                                                >  2:636017/1‑140 (MQ=255)

                                                                       tGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCttt                                                                >  2:56515/1‑140 (MQ=255)

                                                                        gCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTa                                                               <  2:1068395/140‑1 (MQ=255)

                                                                        gCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTa                                                               <  2:2046947/140‑1 (MQ=255)

                                                                        gCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTa                                                               <  1:1899651/140‑1 (MQ=255)

                                                                        gCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTa                                                               <  2:1833705/140‑1 (MQ=255)

                                                                          aGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACa                                                             <  2:1986808/140‑1 (MQ=255)

                                                                           ggTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACAt                                                            <  2:2253399/140‑1 (MQ=255)

                                                                              aGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCt                                                         >  2:25595/1‑140 (MQ=255)

                                                                               ggAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTg                                                        >  2:1149561/1‑140 (MQ=255)

                                                                               ggAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTg                                                        <  1:1203339/140‑1 (MQ=255)

                                                                                gAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTgg                                                       >  1:1866250/1‑140 (MQ=255)

                                                                                         tCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGc                                              >  1:1030885/1‑140 (MQ=255)

                                                                                         tCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGc                                              <  2:1974270/140‑1 (MQ=255)

                                                                                         tCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGc                                              <  1:2270822/140‑1 (MQ=255)

                                                                                          cGTTGGTGATGGCGGTGGAATCGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAGCAGGATGCCCCAGTTTTTGCCTAAATAACCGCTAATGACGCTCGGGTAAGCTTTACATTCTGGTGATTCTGcc                                             <  2:2192692/140‑1 (MQ=255)

                                                                                          cGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGcc                                             <  1:56515/140‑1 (MQ=255)

                                                                                           gTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCa                                            >  2:1474626/1‑140 (MQ=255)

                                                                                             tGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGc                                          <  2:518161/140‑1 (MQ=255)

                                                                                              ggTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCg                                         <  1:640943/140‑1 (MQ=255)

                                                                                              ggTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCg                                         <  2:2064407/140‑1 (MQ=255)

                                                                                              ggTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCg                                         <  1:1977793/140‑1 (MQ=255)

                                                                                                 gATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTAt                                      >  1:1244009/1‑140 (MQ=255)

                                                                                                 gATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTAt                                      <  1:388347/140‑1 (MQ=255)

                                                                                                         tGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAAc                              >  1:1786804/1‑140 (MQ=255)

                                                                                                         tGGAATAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAAc                              >  1:62649/1‑140 (MQ=255)

                                                                                                              tAGACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCg                         <  2:784126/140‑1 (MQ=255)

                                                                                                                ggcGAACATCCAAAGCACCAGCAATGCGAAATAGAGCGCCCCTACCAGGATGCCCCAGTTTTTACCTAAACAGCCGCTAATGGCGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCt                       <  2:1980221/138‑1 (MQ=255)

                                                                                                                gACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCt                       <  2:1064804/140‑1 (MQ=255)

                                                                                                                gACGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCt                       <  1:1686096/140‑1 (MQ=255)

                                                                                                                  cGAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGa                     <  2:1754493/140‑1 (MQ=255)

                                                                                                                   gAACATCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAAt                           >  1:1570622/1‑133 (MQ=255)

                                                                                                                        tCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGaa                    >  1:356651/1‑135 (MQ=255)

                                                                                                                        tCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGa               >  2:2324663/1‑140 (MQ=255)

                                                                                                                        tCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGa               >  2:2276717/1‑140 (MQ=255)

                                                                                                                        tCCAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGa               >  2:910182/1‑140 (MQ=255)

                                                                                                                         ccAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGAt              <  1:1474626/140‑1 (MQ=255)

                                                                                                                          cAAATCACCAGCGTTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATa             >  2:324182/1‑140 (MQ=255)

                                                                                                                          cAAATCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATa             >  1:1658122/1‑140 (MQ=255)

                                                                                                                           aaaTCACCAGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATAc            >  2:95612/1‑140 (MQ=255)

                                                                                                                            aaTCACCAGCGTTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACa           <  1:324182/140‑1 (MQ=255)

                                                                                                                                   aGCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCgg    >  1:1546170/1‑140 (MQ=255)

                                                                                                                                    gCATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCggg   <  1:1332018/140‑1 (MQ=255)

                                                                                                                                     cATTGCGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCGGGt  <  2:1030885/140‑1 (MQ=255)

CCAGAATGCAAATCAGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCGGGT  >  NC_000913/3257512‑3257784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A