Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,486,448 A→C N110T (AAC→ACC)  crp → DNA‑binding transcriptional dual regulator CRP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,486,4480AC100.0% 414.5 / NA 115N110T (AAC→ACC) crpDNA‑binding transcriptional dual regulator CRP
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (56/59);  total (56/59)

Only 100 of 116 total aligned reads displayed.

TCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCA  >  NC_000913/3486311‑3486584
                                                                                                                                         |                                                                                                                                        
tCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAAccc                                                                                                                                        >  1:321256/1‑140 (MQ=255)
   gAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCgg                                                                                                                                     <  1:116783/140‑1 (MQ=255)
    aaTCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTTCGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGa                                                                                                                                    >  1:330142/1‑140 (MQ=255)
    aaTCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGa                                                                                                                                    >  1:1058618/1‑140 (MQ=255)
    aaTCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGa                                                                                                                                    >  2:497612/1‑140 (MQ=255)
     aTCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGAc                                                                                                                                   >  2:1508494/1‑140 (MQ=255)
     aTCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGAc                                                                                                                                   >  1:1715476/1‑140 (MQ=255)
     aTCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGAc                                                                                                                                   >  1:2061134/1‑140 (MQ=255)
     aTCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGAc                                                                                                                                   >  1:2396656/1‑140 (MQ=255)
       cAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACAt                                                                                                                                 >  2:812650/1‑140 (MQ=255)
       cAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACAt                                                                                                                                 >  2:1113254/1‑140 (MQ=255)
       cAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACAt                                                                                                                                 >  1:2236968/1‑140 (MQ=255)
          ggTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCt                                                                                                                              >  1:1855852/1‑140 (MQ=255)
          ggTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCt                                                                                                                              >  2:252399/1‑140 (MQ=255)
          ggTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCt                                                                                                                              >  1:1017877/1‑140 (MQ=255)
              aTTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCgg                                                                                                                                     >  1:187874/1‑129 (MQ=255)
              aTTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATg                                                                                                                          >  1:2372358/1‑140 (MQ=255)
                tttATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCg                                                                                                                        <  1:812650/140‑1 (MQ=255)
                tttATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCAAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCg                                                                                                                        <  2:1892446/140‑1 (MQ=255)
                tttATGGGGGAGCTGGGCCTGTTTGAAGTGGGCGAGGAGCGTAGCCAATGGGTCCGTGAGAAAGCCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCg                                                                                                                        <  2:357329/140‑1 (MQ=255)
                  tATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGtt                                                                                                                      <  1:654479/140‑1 (MQ=255)
                    ttGCCGAACTGGGCCGTTTTGAAAAGGACCAGGAACGTAGGGAATGGCTACTGGGGAAAGCCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTg                                                                                                                    <  2:2115529/140‑1 (MQ=255)
                     gggCGAACTGGGCTTTTTTGAAGGGGGCCAGGAACGTAGCGCATGGGTACGTGCAAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGt                                                                                                                   <  2:1120916/139‑1 (MQ=255)
                        cGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTc                                                                                                                  <  2:130761/138‑1 (MQ=255)
                        cGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTc                                                                                                                  >  1:130761/1‑138 (MQ=255)
                          aaCGGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCAAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGca                                                                                                              <  2:1151180/140‑1 (MQ=255)
                                 ccTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATgg                                                                                                       >  2:1723170/1‑140 (MQ=255)
                                 ccTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATgg                                                                                                       >  1:1586119/1‑140 (MQ=255)
                                      ttGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGcgt                                                                                                  >  1:1837579/1‑140 (MQ=255)
                                       tGAAGGGGGCCAGGAACGTGGCGAAGGGGTACGGGCAAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGcgtc                                                                                                 <  2:1708817/140‑1 (MQ=255)
                                       tGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCAAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGcgtc                                                                                                 <  1:397790/140‑1 (MQ=255)
                                       ggAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCAAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGcgtc                                                                                                 <  2:1076380/139‑1 (MQ=255)
                                         aaGAGGGCCAGGAACGTAGCGCATGGGTTCGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGcgtcgt                                                                                               <  2:330142/140‑1 (MQ=255)
                                         aaGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGcgtcgt                                                                                               >  1:1082967/1‑140 (MQ=255)
                                              ggCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCa                                                                                          >  1:1008722/1‑140 (MQ=255)
                                               gCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGcgtcgt                                                                                               >  2:1975047/1‑134 (MQ=255)
                                               gCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGcgtcgt                                                                                               <  1:1975047/134‑1 (MQ=255)
                                               gCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCaa                                                                                         >  2:112844/1‑140 (MQ=255)
                                               gCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCaa                                                                                         >  2:134512/1‑140 (MQ=255)
                                               gCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCaa                                                                                         >  1:675720/1‑140 (MQ=255)
                                               gCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCaa                                                                                         >  2:867196/1‑140 (MQ=255)
                                               gCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCaa                                                                                         >  1:1638207/1‑140 (MQ=255)
                                                 cAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGt                                                                                       <  1:773199/140‑1 (MQ=255)
                                                    gAACGTGGCGCATGGTTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCAc                                                                                    <  1:1784584/140‑1 (MQ=255)
                                                    gAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCAc                                                                                    <  1:867196/140‑1 (MQ=255)
                                                         tAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCAc                                                                                    >  1:1557143/1‑135 (MQ=255)
                                                         tAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCAc                                                                                    <  2:1557143/135‑1 (MQ=255)
                                                         tAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCag                                                                               >  2:7765/1‑140 (MQ=255)
                                                         tAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCag                                                                               >  2:1753135/1‑140 (MQ=255)
                                                         tAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCag                                                                               >  2:1073746/1‑140 (MQ=255)
                                                         tAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCag                                                                               >  1:1275711/1‑140 (MQ=255)
                                                         tAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCag                                                                               >  2:355502/1‑140 (MQ=255)
                                                         tAGCGCATGGGTACGTGCAAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCag                                                                               <  2:2236968/140‑1 (MQ=255)
                                                              cATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGaaa                                                                          >  2:407623/1‑140 (MQ=255)
                                                              cATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGaaa                                                                          >  1:252931/1‑140 (MQ=255)
                                                              cATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGaaa                                                                          >  1:1821528/1‑140 (MQ=255)
                                                              cATGGGTACGTGCAAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGaaa                                                                          <  2:1586119/140‑1 (MQ=255)
                                                               aTGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAg                                                                         >  2:813906/1‑140 (MQ=255)
                                                                   gTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTggg                                                                     <  2:1837579/140‑1 (MQ=255)
                                                                   gTACGTGCAAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTggg                                                                     <  2:675720/140‑1 (MQ=255)
                                                                     aCGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCa                                                                   <  2:1275711/140‑1 (MQ=255)
                                                                     aCGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCa                                                                   <  2:2061134/140‑1 (MQ=255)
                                                                        tGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAAcc                                                                >  2:319112/1‑140 (MQ=255)
                                                                             aaaCCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCg                                                           >  2:1962496/1‑140 (MQ=255)
                                                                             aaaCCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCg                                                           >  1:745442/1‑140 (MQ=255)
                                                                                  gCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCt                                                      >  2:2226844/1‑140 (MQ=255)
                                                                                  gCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCt                                                      >  2:1972069/1‑140 (MQ=255)
                                                                                    cTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCg                                                    <  1:1113254/140‑1 (MQ=255)
                                                                                    cTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCg                                                    <  1:407623/140‑1 (MQ=255)
                                                                                       tgAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACg                                                 >  1:1439226/1‑140 (MQ=255)
                                                                                            tGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACg                                            >  1:2072714/1‑140 (MQ=255)
                                                                                              gCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCg                                                           >  2:1589032/1‑123 (MQ=255)
                                                                                              gCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCg                                                           <  1:1589032/123‑1 (MQ=255)
                                                                                              gCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACggg                                          <  2:1538232/140‑1 (MQ=255)
                                                                                              gCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACggg                                          <  2:1821528/140‑1 (MQ=255)
                                                                                              gCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACggg                                          <  2:1082967/140‑1 (MQ=255)
                                                                                              gCTGAAATTTCGTACAAAAAATTTCGCCAATTGATACAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACggg                                          <  1:455627/140‑1 (MQ=255)
                                                                                                 gAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCg                                       >  1:197198/1‑140 (MQ=255)
                                                                                                  aaaTTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGc                                      <  2:1855852/140‑1 (MQ=255)
                                                                                                   aaTTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCa                                     <  1:112844/140‑1 (MQ=255)
                                                                                                   aaTTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCa                                     <  2:2058700/140‑1 (MQ=255)
                                                                                                   aaTTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCa                                     <  1:134512/140‑1 (MQ=255)
                                                                                                    aTTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTGTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCAt                                    <  2:1058618/140‑1 (MQ=255)
                                                                                                    aTTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCAt                                    <  1:2226844/140‑1 (MQ=255)
                                                                                                       tCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGc                                 <  1:1073746/140‑1 (MQ=255)
                                                                                                       tCGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGc                                 <  2:745442/140‑1 (MQ=255)
                                                                                                        cGTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGca                                <  1:813906/140‑1 (MQ=255)
                                                                                                         gTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGcac                               <  2:1638207/140‑1 (MQ=255)
                                                                                                         gTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGcac                               >  2:198525/1‑140 (MQ=255)
                                                                                                         gTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGcac                               <  1:497612/140‑1 (MQ=255)
                                                                                                         gTACAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGcac                               <  1:1306822/140‑1 (MQ=255)
                                                                                                            cAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGa                            <  1:1758891/140‑1 (MQ=255)
                                                                                                            cAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGa                            <  2:1017877/140‑1 (MQ=255)
                                                                                                            cAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGa                            <  2:197198/140‑1 (MQ=255)
                                                                                                            cAAAAAATTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGACACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGa                            <  1:1508494/140‑1 (MQ=255)
                                                                                                             aaaaaaTTTCGCCAATTGATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGAc                           <  2:1572870/140‑1 (MQ=255)
                                                                                                                              gATTCAGGTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCaa          <  2:1715476/140‑1 (MQ=255)
                                                                                                                                    ggTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAaacaac    <  1:1962496/140‑1 (MQ=255)
                                                                                                                                     gTAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAAcc   >  2:2054118/1‑140 (MQ=255)
                                                                                                                                      tAACCCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCa  <  1:355502/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
TCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCAACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCA  >  NC_000913/3486311‑3486584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A