Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,777,538 T→C V47A (GTG→GCG)  lldP → lactate/glycolate:H(+) symporter LldP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,777,5380TC100.0% 787.9 / NA 217V47A (GTG→GCG) lldPlactate/glycolate:H(+) symporter LldP
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (75/142);  total (75/142)

Only 100 of 222 total aligned reads displayed.

AATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGTGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTA  >  NC_000913/3777402‑3777670
                                                                                                                                        |                                                                                                                                    
aaTCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACggcggc                                                                                                                                   >  2:1601427/1‑140 (MQ=255)
aaTCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACggcggc                                                                                                                                   >  1:1325346/1‑140 (MQ=255)
  tctcTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCaa                                                                                                                                 <  2:451803/140‑1 (MQ=255)
  tctcTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCaa                                                                                                                                 <  2:1261724/140‑1 (MQ=255)
   ctctGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAAt                                                                                                                                <  1:2111437/140‑1 (MQ=255)
   ctctGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAAt                                                                                                                                <  1:1733025/140‑1 (MQ=255)
       ggCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGcc                                                                                                                            <  2:2099083/140‑1 (MQ=255)
        gCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGccc                                                                                                                           <  1:1166546/140‑1 (MQ=255)
        gCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGccc                                                                                                                           >  2:1198993/1‑140 (MQ=255)
        gCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGccc                                                                                                                           >  1:1011583/1‑140 (MQ=255)
        gCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGccc                                                                                                                           >  1:214177/1‑140 (MQ=255)
                 cTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTgg                                                                                                                  <  1:725249/140‑1 (MQ=255)
                   aCGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCt                                                                                                                >  2:756860/1‑140 (MQ=255)
                    cGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCtt                                                                                                               <  2:803724/140‑1 (MQ=255)
                      aTCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTg                                                                                                             <  2:2225074/140‑1 (MQ=255)
                      aTCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTg                                                                                                             <  1:1374628/140‑1 (MQ=255)
                      aTCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTg                                                                                                             <  2:1820550/140‑1 (MQ=255)
                      aTCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTg                                                                                                             <  2:2214923/140‑1 (MQ=255)
                      aTCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTg                                                                                                             <  2:295377/140‑1 (MQ=255)
                      aTCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTg                                                                                                             <  1:2301160/140‑1 (MQ=255)
                      aTCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGAATAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTg                                                                                                             <  2:2187734/140‑1 (MQ=255)
                         ccgccgGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTg                                                                                                          <  2:950968/140‑1 (MQ=255)
                          cgccgGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGt                                                                                                         <  2:381820/140‑1 (MQ=255)
                          cgccgGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGt                                                                                                         >  1:1312265/1‑140 (MQ=255)
                           gccgGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGtt                                                                                                        >  2:709767/1‑140 (MQ=255)
                           gccgGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGtt                                                                                                        <  2:1456838/140‑1 (MQ=255)
                           gccgGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCCCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGtt                                                                                                        <  1:825727/140‑1 (MQ=255)
                            ccgGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTg                                                                                                             <  1:110934/134‑1 (MQ=255)
                            ccgGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTg                                                                                                             >  2:110934/1‑134 (MQ=255)
                            ccgGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTc                                                                                                       >  1:973943/1‑140 (MQ=255)
                                         gCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCgg                                                                                          >  2:654156/1‑140 (MQ=255)
                                          cTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGt                                                                                         <  1:846941/140‑1 (MQ=255)
                                          cTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGt                                                                                         <  1:2032254/140‑1 (MQ=255)
                                          cTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGt                                                                                         >  2:1742533/1‑140 (MQ=255)
                                          cTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGt                                                                                         <  1:2250871/140‑1 (MQ=255)
                                             tCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGc                                                                                      >  1:2284354/1‑140 (MQ=255)
                                                   cTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAAcgc                                                                                >  2:269554/1‑140 (MQ=255)
                                                    tGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAAcgcg                                                                               <  2:1128341/140‑1 (MQ=255)
                                                    tGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAAcgcg                                                                               <  2:1011583/140‑1 (MQ=255)
                                                         gCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGc                                                                          <  2:1440812/140‑1 (MQ=255)
                                                         gCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGc                                                                          <  1:854200/140‑1 (MQ=255)
                                                           aTCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCt                                                                        <  2:1641666/140‑1 (MQ=255)
                                                            tCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAAcgcg                                                                               >  2:1798894/1‑132 (MQ=255)
                                                            tCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCt                                                                             <  1:585062/134‑1 (MQ=255)
                                                              gCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCGAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCgg                                                                     <  1:1197393/140‑1 (MQ=255)
                                                                ttCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCg                                                                      >  2:851829/1‑137 (MQ=255)
                                                                     aTCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCg                                                                      >  1:902416/1‑132 (MQ=255)
                                                                     aTCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCg                                                                      <  2:902416/132‑1 (MQ=255)
                                                                       ccTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATg                                                            >  2:411877/1‑140 (MQ=255)
                                                                         tGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGt                                                          >  2:2124695/1‑140 (MQ=255)
                                                                         tGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGt                                                          <  1:2198708/140‑1 (MQ=255)
                                                                         tGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGt                                                          <  2:1588667/140‑1 (MQ=255)
                                                                         tGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGt                                                          <  1:756860/140‑1 (MQ=255)
                                                                         tGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGt                                                          <  1:654156/140‑1 (MQ=255)
                                                                          gTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGtt                                                         <  2:2252347/140‑1 (MQ=255)
                                                                          gTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGtt                                                         <  1:718521/140‑1 (MQ=255)
                                                                           tttttCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGttt                                                        <  2:1416254/140‑1 (MQ=255)
                                                                                  tcttTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTAc                                                 <  1:1601427/140‑1 (MQ=255)
                                                                                  tcttTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTAc                                                 <  1:1451056/140‑1 (MQ=255)
                                                                                  tcttTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTAc                                                 >  2:1937792/1‑140 (MQ=255)
                                                                                   cttTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACg                                                <  1:1937792/140‑1 (MQ=255)
                                                                                     ttGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACggg                                              <  1:269554/140‑1 (MQ=255)
                                                                                     ttGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACggg                                              >  2:1726078/1‑140 (MQ=255)
                                                                                        cgcTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTtg                                           >  1:2013425/1‑140 (MQ=255)
                                                                                           tGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTgg                                        <  2:1354342/140‑1 (MQ=255)
                                                                                             aTTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGcc                                      <  1:1416277/140‑1 (MQ=255)
                                                                                               tAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCa                                    <  1:352384/140‑1 (MQ=255)
                                                                                                  gCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATcg                                 <  1:1903901/140‑1 (MQ=255)
                                                                                                    tCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATcgcg                               <  2:1698953/140‑1 (MQ=255)
                                                                                                    tCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATcgcg                               <  2:882540/140‑1 (MQ=255)
                                                                                                    tCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATcgcg                               <  2:214177/140‑1 (MQ=255)
                                                                                                      aaaCTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTg                             <  2:2370397/140‑1 (MQ=255)
                                                                                                       aaCTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTgg                            <  2:1945660/140‑1 (MQ=255)
                                                                                                       aaCTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTgg                            >  1:2340819/1‑140 (MQ=255)
                                                                                                        aCTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATcgcg                               <  2:181394/136‑1 (MQ=255)
                                                                                                        aCTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATcgcg                               >  1:181394/1‑136 (MQ=255)
                                                                                                         cTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGAt                          <  1:1099129/140‑1 (MQ=255)
                                                                                                         cTGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGAt                          <  1:1632565/140‑1 (MQ=255)
                                                                                                          tGAAAGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATc                         <  1:1797988/140‑1 (MQ=255)
                                                                                                            aaaGGATACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCat                       <  1:1512034/140‑1 (MQ=255)
                                                                                                                  tACGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGc                 >  1:319358/1‑140 (MQ=255)
                                                                                                                    cGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTg                             <  2:980036/126‑1 (MQ=255)
                                                                                                                    cGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTg                             >  1:980036/1‑126 (MQ=255)
                                                                                                                    cGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAg               <  2:619979/140‑1 (MQ=255)
                                                                                                                    cGTCGCCGCCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAg               >  2:2295337/1‑140 (MQ=255)
                                                                                                                       cgccgcCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCgg            <  1:460887/140‑1 (MQ=255)
                                                                                                                       cgccgcCTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCgg            >  2:1955679/1‑140 (MQ=255)
                                                                                                                          cgccTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGGTCTATAAAATGCCGGTCGGTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCg             >  2:2147172/1‑136 (MQ=255)
                                                                                                                           gccTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGtt        <  1:874323/140‑1 (MQ=255)
                                                                                                                           gccTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGtt        <  1:1726078/140‑1 (MQ=255)
                                                                                                                           gccTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGtt        <  2:1500700/140‑1 (MQ=255)
                                                                                                                            ccTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTc       <  2:1312265/140‑1 (MQ=255)
                                                                                                                            ccTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTc       <  1:1681644/140‑1 (MQ=255)
                                                                                                                            ccTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTc       <  2:966652/140‑1 (MQ=255)
                                                                                                                             cTCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCg      <  1:1532474/140‑1 (MQ=255)
                                                                                                                              tCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGt     <  1:2035111/140‑1 (MQ=255)
                                                                                                                              tCGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGt     <  2:2013425/140‑1 (MQ=255)
                                                                                                                               cGTGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCg             >  1:1948459/1‑131 (MQ=255)
                                                                                                                                 tGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCg             >  1:803904/1‑129 (MQ=255)
                                                                                                                                 tGGACGGCGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCta  <  2:836304/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                    
AATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGTTTTTCTTCTTTGCGCTGATTAAGCTCAAACTGAAAGGATACGTCGCCGCCTCGTGGACGGTGGCAATCGCCCTTGCCGTGGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTA  >  NC_000913/3777402‑3777670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A