Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,802,925 Δ1 bp coding (134/1020 nt) waaO ← UDP‑D‑glucose:(glucosyl)LPS alpha‑1,3‑glucosyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,802,9230A.100.0% 607.8 / NA 141coding (136/1020 nt)waaOUDP‑D‑glucose:(glucosyl)LPS alpha‑1,3‑glucosyltransferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (78/63);  total (78/63)

Only 100 of 150 total aligned reads displayed.

ATCAGATATATTTTAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCGAAATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAACACCTGCTGCA  >  NC_000913/3802784‑3803057
                                                                                                                                           |                                                                                                                                      
aTCAGATATATTTTAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCGa                                                                                                                                        >  1:1830764/1‑140 (MQ=255)
 tCAGATATATTTTAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCGaa                                                                                                                                       >  1:381058/1‑140 (MQ=255)
 tCAGATATATTTTAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCGaa                                                                                                                                       <  1:1525800/140‑1 (MQ=255)
     atatatTTTAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCGaattcc                                                                                                                                   >  2:1859316/1‑136 (MQ=255)
     atatatTTTAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCGaattcc                                                                                                                                   >  2:1889442/1‑136 (MQ=255)
     atatatTTTAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCGaattcc                                                                                                                                   >  2:523351/1‑136 (MQ=255)
      tatatTTTAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCg                                                                                                                                 <  1:478094/140‑1 (MQ=255)
          ttttAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAAc                                                                                                                             <  2:1354795/140‑1 (MQ=255)
          ttttAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAAc                                                                                                                             <  1:371839/140‑1 (MQ=255)
               aTTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCaaa                                                                                                                         >  2:1703727/1‑139 (MQ=255)
               aTTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCaaa                                                                                                                         <  1:1703727/139‑1 (MQ=255)
                 tCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTACTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAg                                                                                                                      >  2:511455/1‑140 (MQ=255)
                  cTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGa                                                                                                                     <  2:2288913/140‑1 (MQ=255)
                     gTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCaaa                                                                                                                         >  2:111604/1‑133 (MQ=255)
                     gTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAg                                                                                                                  <  2:868378/140‑1 (MQ=255)
                               gCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTctg                                                                                                        >  2:2227082/1‑138 (MQ=255)
                               gCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAg                                                                                                        >  2:134919/1‑140 (MQ=255)
                               gCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAg                                                                                                        >  1:2034902/1‑140 (MQ=255)
                               gCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAg                                                                                                        >  2:1831492/1‑140 (MQ=255)
                               gCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAg                                                                                                        >  1:743707/1‑140 (MQ=255)
                                cAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGt                                                                                                       >  2:829021/1‑140 (MQ=255)
                                cAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGt                                                                                                       >  1:1096426/1‑140 (MQ=255)
                                cAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGt                                                                                                       >  2:1020697/1‑140 (MQ=255)
                                    gCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCa                                                                                                   <  1:1786011/140‑1 (MQ=255)
                                     ccAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGtt                                                                                                                <  1:39094/126‑1 (MQ=255)
                                     ccAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGtt                                                                                                                >  2:39094/1‑126 (MQ=255)
                                     ccAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGtt                                                                                                                <  1:1962290/126‑1 (MQ=255)
                                     ccAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGtt                                                                                                                >  2:1962290/1‑126 (MQ=255)
                                        gggCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGtt                                                                                                                <  1:1157776/123‑1 (MQ=255)
                                        gggCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGtt                                                                                                                >  1:122584/1‑123 (MQ=255)
                                        gggCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGtt                                                                                                                >  2:1157776/1‑123 (MQ=255)
                                        gggCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGtt                                                                                                                <  2:122584/123‑1 (MQ=255)
                                        gggCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAg                                                                                               >  1:2337092/1‑140 (MQ=255)
                                         ggCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGc                                                                                              >  1:1617711/1‑140 (MQ=255)
                                              cAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGt                                                                                         >  1:644182/1‑140 (MQ=255)
                                               aaaaTACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTc                                                                                        <  1:484216/140‑1 (MQ=255)
                                               aaaaTACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTc                                                                                        <  1:2031094/140‑1 (MQ=255)
                                                 aaTACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCa                                                                                      <  2:1617711/140‑1 (MQ=255)
                                                           atcatcatcACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGAtt                                                                            >  2:2346650/1‑140 (MQ=255)
                                                             catcatcaCCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGAtttt                                                                          >  1:528340/1‑140 (MQ=255)
                                                             catcatcaCCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGAtttt                                                                          <  1:134919/140‑1 (MQ=255)
                                                             catcatcaCCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGAtttt                                                                          <  2:688263/140‑1 (MQ=255)
                                                             catcatcaCCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGAtttt                                                                          <  1:2116798/140‑1 (MQ=255)
                                                              atcatcaCCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTc                                                                         <  2:1830764/140‑1 (MQ=255)
                                                              atcatcaCCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTc                                                                         >  2:294225/1‑140 (MQ=255)
                                                               tcatcaCCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCt                                                                        >  1:328595/1‑140 (MQ=255)
                                                               tcatcaCCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCt                                                                        >  2:805885/1‑140 (MQ=255)
                                                                catcaCCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTg                                                                       >  2:1763007/1‑140 (MQ=255)
                                                                  tcaCCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCtttt                                                                     >  1:818021/1‑140 (MQ=255)
                                                                   caCCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGttt                                                                    <  1:1678512/140‑1 (MQ=255)
                                                                   caCCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGttt                                                                    <  2:1501501/140‑1 (MQ=255)
                                                                    aCCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTc                                                                   <  2:328595/140‑1 (MQ=255)
                                                                      cAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGttt                                                                    >  1:290576/1‑137 (MQ=255)
                                                                      cAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGttt                                                                    <  2:290576/137‑1 (MQ=255)
                                                                      cAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTa                                                                 <  1:1113044/140‑1 (MQ=255)
                                                                      cAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTa                                                                 >  1:2259414/1‑140 (MQ=255)
                                                                      cAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTa                                                                 >  1:1403945/1‑140 (MQ=255)
                                                                        aaaTAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACt                                                               >  1:1058653/1‑140 (MQ=255)
                                                                        aaaTAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACt                                                               >  1:1772283/1‑140 (MQ=255)
                                                                          ataatCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACttt                                                             <  2:381058/140‑1 (MQ=255)
                                                                           taatCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTa                                                            <  2:2135207/140‑1 (MQ=255)
                                                                           taatCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTa                                                            <  1:829021/140‑1 (MQ=255)
                                                                             atCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATg                                                          >  1:311674/1‑140 (MQ=255)
                                                                              tCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGa                                                         >  2:220492/1‑140 (MQ=255)
                                                                                aGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATc                                                       >  1:134770/1‑140 (MQ=255)
                                                                                 gTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCa                                                      <  1:523351/140‑1 (MQ=255)
                                                                                 gTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCa                                                      <  1:2346650/140‑1 (MQ=255)
                                                                                 gTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCa                                                      <  1:2365958/140‑1 (MQ=255)
                                                                                 gTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCa                                                      <  2:1066882/140‑1 (MQ=255)
                                                                                  tAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCa                                                      >  1:200251/1‑139 (MQ=255)
                                                                                  tAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCAt                                                     >  1:287768/1‑140 (MQ=255)
                                                                                   aaaaaTATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATa                                                    >  1:1016855/1‑140 (MQ=255)
                                                                                           ggAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATaa                                            <  1:1763007/140‑1 (MQ=255)
                                                                                           ggAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATaa                                            <  2:1661431/140‑1 (MQ=255)
                                                                                            gAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTATACTTTATGATCATAATCAATAAc                                           >  2:1734304/1‑140 (MQ=255)
                                                                                                cacaATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCa                                                      >  1:1591772/1‑125 (MQ=255)
                                                                                                cacaATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGaa                                       >  2:1954820/1‑140 (MQ=255)
                                                                                                   aaTCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTa                                    >  2:1523210/1‑140 (MQ=255)
                                                                                                   aaTCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTa                                    <  2:98458/140‑1 (MQ=255)
                                                                                                     tCGACTTCCTTCATTATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAg                                  <  1:1839799/140‑1 (MQ=255)
                                                                                                                  ttATATTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTcc                     <  2:311674/140‑1 (MQ=255)
                                                                                                                   tataTTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCt                    >  2:656649/1‑140 (MQ=255)
                                                                                                                      atTTTAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGa                 >  2:2332480/1‑140 (MQ=255)
                                                                                                                        tttAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGaaa               <  1:2227082/140‑1 (MQ=255)
                                                                                                                          tAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGaaaaa             >  2:92645/1‑140 (MQ=255)
                                                                                                                          tAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGaaaaa             >  2:844406/1‑140 (MQ=255)
                                                                                                                          tAATATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGaaaaa             >  1:834021/1‑140 (MQ=255)
                                                                                                                           aaTATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAac            <  2:1403945/140‑1 (MQ=255)
                                                                                                                           aaTATTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAac            <  1:1889442/140‑1 (MQ=255)
                                                                                                                            atatTGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCTATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAaca           >  2:1702385/1‑140 (MQ=255)
                                                                                                                               ttGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAACACct        >  2:255680/1‑140 (MQ=255)
                                                                                                                               ttGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTCTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAACACct        >  2:2353723/1‑140 (MQ=255)
                                                                                                                                tGAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAACACctg       <  2:2034902/140‑1 (MQ=255)
                                                                                                                                 gAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAACACctgc      >  1:355183/1‑140 (MQ=255)
                                                                                                                                 gAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAACACctgc      <  2:1249515/140‑1 (MQ=255)
                                                                                                                                 gAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAACACctgc      <  1:2190462/140‑1 (MQ=255)
                                                                                                                                 gAAGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAACACctgc      <  2:1409391/140‑1 (MQ=255)
                                                                                                                                  aaGCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAACACctgct     >  1:275216/1‑140 (MQ=255)
                                                                                                                                    gCAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAACACCtgctgc   <  1:881581/140‑1 (MQ=255)
                                                                                                                                     cAATCG‑AATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAACACCTGCTGCa  <  2:2364079/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                      
ATCAGATATATTTTAATTCTGGTTTTATACTGCAACGCCAGGGCATCAAAATACTTACGATCATCATCACCAAAATAATCAGTAAAAATATGGAAACACAATCGACTTCCTTCATTATATTTTAATATTGAAGCAATCGAAATTCCGCAACCAAATAGAAAGTTTTTGTCAGTTCCATAAGCGATGTCCAGACAAAGATTTTCTGTTTCTACTTTATGATCATAATCAATAACTGAATTAAGAAACTCAGTTTCCTGGAAAAACACCTGCTGCA  >  NC_000913/3802784‑3803057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A