Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	159	82.1	2830106	99.3%	2810295	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	63,566	G→A	P739S (CCG→TCG)	polB ←	DNA polymerase II

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	63,566	0	G	A	100.0%	283.5 / NA	83	P739S (CCG→TCG)	polB	DNA polymerase II
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (37/46); total (37/46)

AGCCCAAGTTGCCCGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGGCTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGCACATTACGCTGATACTC  >  NC_000913/63436‑63701

aGCCCAAGTTGCCCGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGcc                                                                                                                                <  1:884597/140‑1 (MQ=255)

  cccAAGTTGCCCGGTCATAAGAGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCACTCCGCCACGGGTTGTAGCTGGCGGGCCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGt                                                                                                                              >  2:1036751/1‑140 (MQ=255)

    cAAGTTGCCCGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTtg                                                                                                                            <  1:1036751/140‑1 (MQ=255)

     aaGTTGCCCGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTtgg                                                                                                                           <  1:635037/140‑1 (MQ=255)

     aaGTTGCCCGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTtgg                                                                                                                           <  2:703708/140‑1 (MQ=255)

     aaGTTGCCCGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTtgg                                                                                                                           <  1:37612/140‑1 (MQ=255)

       gTTGCCCGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTtggtg                                                                                                                         >  2:588333/1‑140 (MQ=255)

        ttGCCCGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTtggtgg                                                                                                                        <  2:827159/140‑1 (MQ=255)

         tGCCCGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTggtggt                                                                                                                       <  2:742222/140‑1 (MQ=255)

         tGCCCGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTT‑GTGGTc                                                                                                                      <  2:1296351/140‑1 (MQ=255)

          gCCCGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTc                                                                                                                      <  2:1114143/140‑1 (MQ=255)

           cccGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTcc                                                                                                                     >  2:521586/1‑140 (MQ=255)

             cGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCAt                                                                                                                   <  1:588333/140‑1 (MQ=255)

             cGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCAt                                                                                                                   <  1:540086/140‑1 (MQ=255)

             cGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCAt                                                                                                                   <  2:438006/140‑1 (MQ=255)

             cGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCAt                                                                                                                   <  2:72256/140‑1 (MQ=255)

               gTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATAc                                                                                                                 <  2:1168895/140‑1 (MQ=255)

                tCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACg                                                                                                                >  2:383361/1‑140 (MQ=255)

                          aGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCATATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATgg                                                                                                      >  1:271541/1‑140 (MQ=255)

                          aGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTggtggt                                                                                                                       <  2:308710/123‑1 (MQ=255)

                          aGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTggtggt                                                                                                                       >  1:308710/1‑123 (MQ=255)

                          aGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATgg                                                                                                      >  1:805507/1‑140 (MQ=255)

                          aGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATgg                                                                                                      >  2:370709/1‑140 (MQ=255)

                          aGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATgg                                                                                                      >  1:958558/1‑140 (MQ=255)

                          aGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATgg                                                                                                      >  2:1081014/1‑140 (MQ=255)

                          aGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGCTCAGATAGTGTTCGTAATCCAGGGGGGAACGTTGGTAGGCCAGCGACTCCCGGCCGTTGGTGGTCCATACGGCCTTAATgg                                                                                                      >  2:1012725/1‑140 (MQ=255)

                               aaTTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCcg                                                                                                 <  1:1238735/140‑1 (MQ=255)

                                    tCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGAtt                                                                                            <  1:1081014/140‑1 (MQ=255)

                                         aaTAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGat                                                                                       >  1:687839/1‑140 (MQ=255)

                                              aaGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGc                                                                                  >  1:361198/1‑140 (MQ=255)

                                               aGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCa                                                                                 <  2:887904/140‑1 (MQ=255)

                                               aGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCa                                                                                 <  1:370709/140‑1 (MQ=255)

                                                   aGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAggg                                                                             >  1:312740/1‑140 (MQ=255)

                                                   aGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAggg                                                                             >  2:793398/1‑140 (MQ=255)

                                                     tATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAATGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGc                                                                           >  2:1213773/1‑140 (MQ=255)

                                                     tATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGc                                                                           >  2:653615/1‑140 (MQ=255)

                                                      aTTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCg                                                                          >  2:1380674/1‑140 (MQ=255)

                                                        tCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGAc                                                                        <  1:1248035/140‑1 (MQ=255)

                                                        tCCCTCCGCCACGGGTTGTAGCTGGCGGATCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGAc                                                                        >  2:1224477/1‑140 (MQ=255)

                                                         cccTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGAcc                                                                       >  1:615862/1‑140 (MQ=255)

                                                         cccTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGAcc                                                                       <  2:1352522/140‑1 (MQ=255)

                                                           cTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCAc                                                                     >  1:432510/1‑140 (MQ=255)

                                                            tCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACg                                                                    >  1:190876/1‑140 (MQ=255)

                                                            tCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACg                                                                    >  1:1287179/1‑140 (MQ=255)

                                                            tCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACg                                                                    >  1:483659/1‑140 (MQ=255)

                                                                     ggTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGtt                                                           >  2:327835/1‑140 (MQ=255)

                                                                                gCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCgg                                                >  2:1229184/1‑140 (MQ=255)

                                                                                 cGGGTCATATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGc                                               <  2:271541/140‑1 (MQ=255)

                                                                                    gTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAg                                            >  1:130584/1‑140 (MQ=255)

                                                                                    gTCAGATAGTGTTCGTAATCCAATGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAg                                            >  2:1384784/1‑140 (MQ=255)

                                                                                         aTAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAg                                       <  2:12618/140‑1 (MQ=255)

                                                                                         aTAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAg                                       <  2:805507/140‑1 (MQ=255)

                                                                                         aTAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAg                                       <  1:1380674/140‑1 (MQ=255)

                                                                                          tAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAgc                                      >  2:1305316/1‑140 (MQ=255)

                                                                                           aGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAgcg                                     <  2:361198/140‑1 (MQ=255)

                                                                                           aGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAgcg                                     <  1:67710/140‑1 (MQ=255)

                                                                                            gtgtTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAgcgg                                    <  1:1229184/140‑1 (MQ=255)

                                                                                              gtTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAgcggcg                                  <  1:793398/140‑1 (MQ=255)

                                                                                               ttCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGc                                               <  2:935991/126‑1 (MQ=255)

                                                                                               ttCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGc                                               >  1:935991/1‑126 (MQ=255)

                                                                                               ttCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGgcgc                                 <  1:521586/140‑1 (MQ=255)

                                                                                                      tCCAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATg                          >  1:357872/1‑140 (MQ=255)

                                                                                                       ccAGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGa                         >  2:226953/1‑140 (MQ=255)

                                                                                                         aGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAgg                       <  2:615862/140‑1 (MQ=255)

                                                                                                         aGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAgg                       <  1:383361/140‑1 (MQ=255)

                                                                                                         aGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAgg                       <  2:130584/140‑1 (MQ=255)

                                                                                                         aGTGGTGAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAgg                       <  2:357872/140‑1 (MQ=255)

                                                                                                           tggtgAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAggcg                     <  2:240374/140‑1 (MQ=255)

                                                                                                           tggtgAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAggcg                     >  1:240374/1‑140 (MQ=255)

                                                                                                           tggtgAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAggcg                     <  1:653615/140‑1 (MQ=255)

                                                                                                              tgAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGca                  <  2:687839/140‑1 (MQ=255)

                                                                                                               gAACGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGcac                 <  1:1012725/140‑1 (MQ=255)

                                                                                                                aaCGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGcaca                >  1:677471/1‑140 (MQ=255)

                                                                                                                aaCGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGcaca                >  2:1182867/1‑140 (MQ=255)

                                                                                                                 aCGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGCACAt               >  1:75222/1‑140 (MQ=255)

                                                                                                                 aCGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGCACAt               <  2:75222/140‑1 (MQ=255)

                                                                                                                 aCGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGCACAt               <  1:226953/140‑1 (MQ=255)

                                                                                                                 aCGTTGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGCACAt               <  1:1182867/140‑1 (MQ=255)

                                                                                                                     tGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGCACATTACg           <  2:677471/140‑1 (MQ=255)

                                                                                                                     tGGTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGCACATTACg           >  2:717789/1‑140 (MQ=255)

                                                                                                                       gTAGTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGGGCGGCGCGTACATGAGGCGGCACATTACGCt         <  2:483659/140‑1 (MQ=255)

                                                                                                                          gTCCAGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGCACATTACGCTGAt      >  1:941460/1‑140 (MQ=255)

                                                                                                                              aGCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGCACATTACGCTGATACTc  <  1:1305316/140‑1 (MQ=255)

                                                                                                                               gCGACTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGCACATTACg           <  1:985991/130‑1 (MQ=255)

AGCCCAAGTTGCCCGGTCATAAGTGTAGCAAAATTATCCTCAATAAAAGGGAGTATTCCCTCCGCCACGGGTTGTAGCTGGCGGGTCAGATAGTGTTCGTAATCCAGTGGTGAACGTTGGTAGTCCAGCGGCTCCGGGCCGTTGGTGGTCCATACGTACTTAATGGTGCCGCGATTCTGATATTGCAAGGGGCGACCACGCTTTTGGTTTTCTTCATCGGCAAGGCGAGCGGCGCGTACATGAGGCGGCACATTACGCTGATACTC  >  NC_000913/63436‑63701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A