Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,111,535 T→C I148V (ATT→GTT)  rfbD ← dTDP‑4‑dehydrorhamnose reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,111,5350TC100.0% 331.4 / NA 87I148V (ATT→GTT) rfbDdTDP‑4‑dehydrorhamnose reductase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (45/42);  total (45/42)

CAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGTCG  >  NC_000913/2111401‑2111669
                                                                                                                                      |                                                                                                                                      
cagcagTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGAt                                                                                                                                   >  1:505204/1‑140 (MQ=255)
   cagTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCt                                                                                                                                >  2:824569/1‑140 (MQ=255)
   cagTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCt                                                                                                                                <  2:373650/140‑1 (MQ=255)
   cagTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCt                                                                                                                                >  2:102/1‑140 (MQ=255)
      ttCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTcg                                                                                                                             <  2:1315040/140‑1 (MQ=255)
      ttCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTcg                                                                                                                             >  1:132461/1‑140 (MQ=255)
        cAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTcgcg                                                                                                                           <  2:122827/140‑1 (MQ=255)
         aGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCgcgc                                                                                                                          <  1:87984/140‑1 (MQ=255)
           cACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCaa                                                                                                                        <  1:1042169/140‑1 (MQ=255)
            aCCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAat                                                                                                                       >  1:814508/1‑140 (MQ=255)
              cTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAatat                                                                                                                     <  2:872615/140‑1 (MQ=255)
              cTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAatat                                                                                                                     <  2:1357578/140‑1 (MQ=255)
                gTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTcgcg                                                                                                                           <  2:301057/132‑1 (MQ=255)
                gTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTcgcg                                                                                                                           >  1:301057/1‑132 (MQ=255)
                gTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTc                                                                                                                   >  2:1278833/1‑140 (MQ=255)
                gTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTc                                                                                                                   >  1:1307384/1‑140 (MQ=255)
                   ggCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTg                                                                                                                >  2:1008920/1‑140 (MQ=255)
                     cgcACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTa                                                                                                              >  1:625116/1‑140 (MQ=255)
                     cgcACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTa                                                                                                              >  2:529008/1‑140 (MQ=255)
                      gcACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTaa                                                                                                             <  1:596219/140‑1 (MQ=255)
                        aCCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACg                                                                                                           >  1:709171/1‑140 (MQ=255)
                               tGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTtc                                                                                                    <  1:166012/140‑1 (MQ=255)
                                    gTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCgg                                                                                               <  2:1219304/140‑1 (MQ=255)
                                      taataaCCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCt                                                                                             >  1:677844/1‑140 (MQ=255)
                                       aataaCCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTa                                                                                            >  2:1228809/1‑140 (MQ=255)
                                       aataaCCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTa                                                                                            >  1:1329962/1‑140 (MQ=255)
                                        ataaCCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTaa                                                                                           >  1:609355/1‑140 (MQ=255)
                                               cTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGtt                                                                                    <  2:51474/140‑1 (MQ=255)
                                               cTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGtt                                                                                    >  2:729459/1‑140 (MQ=255)
                                                tAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGttt                                                                                   <  2:609355/140‑1 (MQ=255)
                                                tAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGttt                                                                                   <  1:188274/140‑1 (MQ=255)
                                                 aaTTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTc                                                                                  <  1:1338217/140‑1 (MQ=255)
                                                     cttcACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCg                                                                              <  2:3224/140‑1 (MQ=255)
                                                      ttcACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGt                                                                             <  2:677844/140‑1 (MQ=255)
                                                        cACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTaa                                                                           <  2:709171/140‑1 (MQ=255)
                                                             tctTTTGCCAGACGTAATATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACAtt                                                                      <  2:1259013/140‑1 (MQ=255)
                                                             tctTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACAtt                                                                      >  1:1259013/1‑140 (MQ=255)
                                                             tctTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACAtt                                                                      >  1:570506/1‑140 (MQ=255)
                                                                     cAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAgtggtg                                                              <  1:1326453/140‑1 (MQ=255)
                                                                         cGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGt                                                          >  2:157222/1‑140 (MQ=255)
                                                                         cGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGt                                                          >  2:426274/1‑140 (MQ=255)
                                                                           tAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTg                                                        <  1:390840/140‑1 (MQ=255)
                                                                               aTCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATc                                                    <  2:147844/140‑1 (MQ=255)
                                                                                 cGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCg                                                  >  2:397321/1‑140 (MQ=255)
                                                                                   ttttGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGtc                                                >  2:1025850/1‑140 (MQ=255)
                                                                                   ttttGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGtc                                                >  1:475033/1‑140 (MQ=255)
                                                                                   ttttGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGtc                                                >  1:274434/1‑140 (MQ=255)
                                                                                         cGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGc                                          <  2:274434/140‑1 (MQ=255)
                                                                                          gAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGcc                                         <  1:529008/140‑1 (MQ=255)
                                                                                           aaGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCa                                        <  2:442804/140‑1 (MQ=255)
                                                                                             gTTATTTCCTTTTCCTGCATAGACCCATCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTcc                                             <  1:1231835/133‑1 (MQ=255)
                                                                                             gTTATTTCCTTTTCCTGCATAGACCCATCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTcc                                             >  2:1231835/1‑133 (MQ=255)
                                                                                                 tttccttttcctGCATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCat                                  <  1:1278833/140‑1 (MQ=255)
                                                                                                              cATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCa                     <  2:475033/140‑1 (MQ=255)
                                                                                                              cATAGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCa                     >  2:371216/1‑140 (MQ=255)
                                                                                                                 aGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAggg                  <  2:1307384/140‑1 (MQ=255)
                                                                                                                 aGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAggg                  <  1:1174818/140‑1 (MQ=255)
                                                                                                                 aGACCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAggg                  <  1:397321/140‑1 (MQ=255)
                                                                                                                   aCCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAggg                  <  2:1091719/138‑1 (MQ=255)
                                                                                                                   aCCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAggg                  >  1:1091719/1‑138 (MQ=255)
                                                                                                                   aCCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGaa                >  2:493327/1‑140 (MQ=255)
                                                                                                                   aCCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGaa                >  1:1279204/1‑140 (MQ=255)
                                                                                                                   aCCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGaa                >  1:435337/1‑140 (MQ=255)
                                                                                                                   aCCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGaa                >  1:734279/1‑140 (MQ=255)
                                                                                                                   aCCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGaa                >  2:535139/1‑140 (MQ=255)
                                                                                                                   aCCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGaa                >  1:211572/1‑140 (MQ=255)
                                                                                                                   aCCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGaa                >  2:160382/1‑140 (MQ=255)
                                                                                                                   aCCCAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGaa                >  1:1355679/1‑140 (MQ=255)
                                                                                                                    cccAGCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAg               <  2:132461/140‑1 (MQ=255)
                                                                                                                        gCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAggg                  >  2:519893/1‑133 (MQ=255)
                                                                                                                        gCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAggg                  <  1:519893/133‑1 (MQ=255)
                                                                                                                        gCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGt           >  2:833039/1‑140 (MQ=255)
                                                                                                                        gCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGt           >  2:927328/1‑140 (MQ=255)
                                                                                                                        gCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGt           >  2:1134523/1‑140 (MQ=255)
                                                                                                                        gCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGt           >  1:695261/1‑140 (MQ=255)
                                                                                                                        gCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGt           >  2:202286/1‑140 (MQ=255)
                                                                                                                        gCTGGTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGt           >  2:144871/1‑140 (MQ=255)
                                                                                                                           ggTCCGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAAt        <  1:535139/140‑1 (MQ=255)
                                                                                                                               cGGAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGt    <  1:371216/140‑1 (MQ=255)
                                                                                                                                ggAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGTc   <  2:211572/140‑1 (MQ=255)
                                                                                                                                ggAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGTc   <  1:348498/140‑1 (MQ=255)
                                                                                                                                ggAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGTc   <  1:144871/140‑1 (MQ=255)
                                                                                                                                ggAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGTc   <  1:1008920/140‑1 (MQ=255)
                                                                                                                                ggAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGTc   <  2:133788/140‑1 (MQ=255)
                                                                                                                                 gAAAACAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGTCg  >  1:834964/1‑140 (MQ=255)
                                                                                                                                  aaaaCAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGTc   >  1:70191/1‑138 (MQ=255)
                                                                                                                                  aaaaCAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGTc   <  2:70191/138‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                      
CAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGTCG  >  NC_000913/2111401‑2111669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A