Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,227,037 Δ1 bp coding (234/762 nt) yohF ← putative oxidoreductase with NAD(P)‑binding Rossmann‑fold domain

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,227,0340C.100.0% 336.9 / NA 76coding (237/762 nt)yohFputative oxidoreductase with NAD(P)‑binding Rossmann‑fold domain
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (42/34);  total (42/34)

TCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCT  >  NC_000913/2226895‑2227166
                                                                                                                                           |                                                                                                                                    
tCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATgcgc                                                                                                                                      >  2:402741/1‑140 (MQ=255)
tCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATgcgc                                                                                                                                      >  1:1324196/1‑140 (MQ=255)
 cTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGcc                                                                                                                                     <  1:1025163/140‑1 (MQ=255)
 cTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGcc                                                                                                                                     <  1:65679/140‑1 (MQ=255)
 cTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGcc                                                                                                                                     <  1:1273609/140‑1 (MQ=255)
  tGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGccc                                                                                                                                    >  2:272962/1‑140 (MQ=255)
   gACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGccca                                                                                                                                   <  2:854396/140‑2 (MQ=255)
     cGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGcccagc                                                                                                                                 <  1:1120712/140‑4 (MQ=255)
       aGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCg                                                                                                                              <  2:1025436/140‑1 (MQ=255)
        gCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGt                                                                                                                             >  2:324379/1‑140 (MQ=255)
              aTTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATg                                                                                                                       <  1:1244296/140‑1 (MQ=255)
                 tGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGt                                                                                                                    <  2:671632/140‑1 (MQ=255)
                    gAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTtc                                                                                                                 >  2:496970/1‑140 (MQ=255)
                          aaGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAgc                                                                                                           <  1:856341/140‑1 (MQ=255)
                            gAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAgcgc                                                                                                         <  1:1236078/140‑1 (MQ=255)
                                gCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGt                                                                                                     >  1:216071/1‑140 (MQ=255)
                                 cACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTg                                                                                                    >  1:1335400/1‑140 (MQ=255)
                                 cACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTg                                                                                                    <  1:1403530/140‑1 (MQ=255)
                                 cACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTg                                                                                                    >  2:621082/1‑140 (MQ=255)
                                  aCCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGc                                                                                                   >  2:573502/1‑140 (MQ=255)
                                  aCCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGc                                                                                                   >  1:522157/1‑140 (MQ=255)
                                  aCCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGc                                                                                                   >  1:546639/1‑140 (MQ=255)
                                   ccATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGcc                                                                                                  <  1:531690/140‑1 (MQ=255)
                                   ccATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGcc                                                                                                  <  1:1089928/140‑1 (MQ=255)
                                   ccATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGcc                                                                                                  <  2:878343/140‑1 (MQ=255)
                                   ccATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCCCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGcc                                                                                                  <  2:1262815/140‑1 (MQ=255)
                                      tCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCt                                                                                               >  1:493908/1‑140 (MQ=255)
                                      tCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCt                                                                                               >  1:636630/1‑140 (MQ=255)
                                      tCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCt                                                                                               >  2:313900/1‑140 (MQ=255)
                                       cGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCtt                                                                                              >  1:819045/1‑140 (MQ=255)
                                       cGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCtt                                                                                              >  2:298972/1‑140 (MQ=255)
                                       cGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCtt                                                                                              >  2:7341/1‑140 (MQ=255)
                                       cGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCtt                                                                                              >  1:5744/1‑140 (MQ=255)
                                            tCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGt                                                                                         <  2:493908/140‑1 (MQ=255)
                                               aCGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGa                                                                                      <  1:829744/140‑1 (MQ=255)
                                                                   cTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCAc                                                                  <  2:370901/140‑1 (MQ=255)
                                                                         aaaaGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGAtctc                                                            <  1:1125106/140‑1 (MQ=255)
                                                                             gCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCa                                                        >  1:707504/1‑140 (MQ=255)
                                                                              ccATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAg                                                                        >  2:547800/1‑123 (MQ=255)
                                                                              ccATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAg                                                                        <  1:547800/123‑1 (MQ=255)
                                                                                atatCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGAt                                                               >  2:342455/1‑130 (MQ=255)
                                                                                atatCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGAt                                                               <  1:342455/130‑1 (MQ=255)
                                                                                atatCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGt                                                     >  2:581156/1‑140 (MQ=255)
                                                                                atatCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGt                                                     >  2:901496/1‑140 (MQ=255)
                                                                                atatCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGt                                                     >  2:164242/1‑140 (MQ=255)
                                                                                  atCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTAc                                                   >  1:659080/1‑140 (MQ=255)
                                                                                  atCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTAc                                                   >  1:913015/1‑140 (MQ=255)
                                                                                   tCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACg                                                  <  1:919180/140‑1 (MQ=255)
                                                                                    cAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGc                                                 <  2:5744/140‑1 (MQ=255)
                                                                                     aaGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGcc                                                <  1:7341/140‑1 (MQ=255)
                                                                                      aGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCg                                               <  2:707504/140‑1 (MQ=255)
                                                                                       gAAACGGCGCTTTGGTCCTTGCCCCCGCATTATTCACCAGCACATCAATGCGCCCC‑GCCGTTGAATGAGTTTCTCCAGCCCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGGTCTCCGCACGTACGCCGt                                              <  2:1265310/140‑1 (MQ=255)
                                                                                       gAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGt                                              >  2:1001634/1‑140 (MQ=255)
                                                                                        aaaCGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTg                                             <  1:573502/140‑1 (MQ=255)
                                                                                          aCGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGc                                                 <  2:1129652/134‑1 (MQ=255)
                                                                                          aCGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGc                                                 >  1:1129652/1‑134 (MQ=255)
                                                                                            ggCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTa                                         >  1:1016639/1‑140 (MQ=255)
                                                                                            ggCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTa                                         <  2:1335400/140‑1 (MQ=255)
                                                                                             gcgcTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTgg                                            >  1:859056/1‑136 (MQ=255)
                                                                                             gcgcTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTgg                                            <  2:859056/136‑1 (MQ=255)
                                                                                             gcgcTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTaa                                        >  1:1265310/1‑140 (MQ=255)
                                                                                              cgcTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGTACGTACGCCGTGGCTAAc                                       >  2:1358770/1‑140 (MQ=255)
                                                                                              cgcTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAAc                                       >  2:849547/1‑140 (MQ=255)
                                                                                              cgcTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAAc                                       >  2:786424/1‑140 (MQ=255)
                                                                                                       cATTGCACCCGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCAcg                              <  2:1296470/140‑1 (MQ=255)
                                                                                                               ccGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTAt                      >  1:847511/1‑140 (MQ=255)
                                                                                                               ccGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTAt                      >  2:354985/1‑140 (MQ=255)
                                                                                                                cGCATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATc                     >  1:1130980/1‑140 (MQ=255)
                                                                                                                  cATTATTCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCtt                   >  1:580003/1‑140 (MQ=255)
                                                                                                                     tattCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTGCGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTg                <  2:869893/140‑1 (MQ=255)
                                                                                                                       ttCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGTCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGcc              <  1:272962/140‑1 (MQ=255)
                                                                                                                       ttCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGcc              <  2:1130980/140‑1 (MQ=255)
                                                                                                                       ttCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGcc              <  2:659080/140‑1 (MQ=255)
                                                                                                                       ttCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGcc              <  1:718587/140‑1 (MQ=255)
                                                                                                                       ttCACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGcc              <  1:901496/140‑1 (MQ=255)
                                                                                                                         cACCAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGcccc            <  1:206282/140‑1 (MQ=255)
                                                                                                                            cAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGTTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCcttc         >  2:444292/1‑140 (MQ=255)
                                                                                                                            cAGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCcttc         >  2:87699/1‑140 (MQ=255)
                                                                                                                             aGCACATCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCcttct        >  1:268218/1‑140 (MQ=255)
                                                                                                                               cacaTCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCttcttc      >  2:349916/1‑140 (MQ=255)
                                                                                                                               cacaTCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCttcttc      >  2:1386173/1‑140 (MQ=255)
                                                                                                                                 caTCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCAt    >  1:361282/1‑140 (MQ=255)
                                                                                                                                 caTCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCAt    >  2:1036786/1‑140 (MQ=255)
                                                                                                                                   tCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCt  <  2:256500/140‑1 (MQ=255)
                                                                                                                                   tCAATGCG‑CCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCt  <  2:216071/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                    
TCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTAACTACCTCACGCGCGGTATCTTTTGCCCCTTCTTCATCT  >  NC_000913/2226895‑2227166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A