Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,336,768 T→C intergenic (‑124/+25) yfaA ← / ← gyrA DUF2138 domain‑containing protein YfaA/DNA gyrase subunit A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,336,7680TC98.8% 290.9 / ‑3.4 80intergenic (‑124/+25)yfaA/gyrADUF2138 domain‑containing protein YfaA/DNA gyrase subunit A
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (51/28);  minor base . (1/0);  total (52/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.80e-01

ACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCTCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCAACCGGTTCAGC  >  NC_000913/2336639‑2336903
                                                                                                                                 |                                                                                                                                       
acTCATTGCCGCATTCCTTGTGTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGc                                                                                                                               <  2:327956/140‑1 (MQ=255)
 cTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCa                                                                                                                              >  2:218538/1‑140 (MQ=255)
    aTTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATga                                                                                                                           <  2:1375090/140‑1 (MQ=255)
    aTTGCCACATTCCTTGCCTATAGCTAGCCATTTTTTACGGGCACAGCCAACCTTTACCGTGCCCTAATACGACAAAACCCCAGACTTTGAAGCCTGGACTTTTCAATTCAAACAAGGTAGACAGCCCCCTTTTGGCACga                                                                                                                           >  2:1028096/1‑140 (MQ=255)
           caTTCCTTGTGTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTTCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTa                                                                                                                    >  1:341166/1‑140 (MQ=255)
           caTTCCTTGTGTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCttt                                                                                                                                   <  1:451607/125‑1 (MQ=255)
           caTTCCTTGTGTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCttt                                                                                                                                   >  2:451607/1‑125 (MQ=255)
              tCCTTGTGTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTaaaa                                                                                                                 >  2:930767/1‑140 (MQ=255)
                cTTGTGTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAatt                                                                                                               >  2:784246/1‑140 (MQ=255)
                cTTGTGTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAatt                                                                                                               >  1:987556/1‑140 (MQ=255)
                  tgtgTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAattat                                                                                                             >  2:1394185/1‑140 (MQ=255)
                  tgtgTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAattat                                                                                                             >  1:1329385/1‑140 (MQ=255)
                   gtgtATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAattatt                                                                                                            >  2:1045299/1‑140 (MQ=255)
                   gtgtATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAattatt                                                                                                            >  1:1393811/1‑140 (MQ=255)
                      tataGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTAttctt                                                                                                         >  2:958019/1‑140 (MQ=255)
                      tataGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTAttctt                                                                                                         >  2:1011704/1‑140 (MQ=255)
                        taGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTAttcttct                                                                                                       >  2:261457/1‑140 (MQ=255)
                        taGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTAttcttct                                                                                                       >  2:1035676/1‑140 (MQ=255)
                        taGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTAttcttct                                                                                                       >  1:454558/1‑140 (MQ=255)
                        taGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTAttcttct                                                                                                       >  1:131969/1‑140 (MQ=255)
                         agccagccATTTTTTACGGGCACAGCCAACCTTTACCGTGCACTAATACCACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTAttcttctt                                                                                                      >  2:1132812/1‑140 (MQ=255)
                         agccagccATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTAttcttctt                                                                                                      >  2:1164002/1‑140 (MQ=255)
                         agccagccATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTAttcttctt                                                                                                      >  1:1366042/1‑140 (MQ=255)
                          gccagccaTTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTAttcttcttc                                                                                                     >  2:47989/1‑140 (MQ=255)
                          gccagccaTTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTAttcttcttc                                                                                                     >  1:96945/1‑140 (MQ=255)
                          gccagccaTTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTAttcttcttc                                                                                                     >  2:42295/1‑140 (MQ=255)
                          gccagccaTTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTAttcttcttc                                                                                                     >  2:1002430/1‑140 (MQ=255)
                           ccagccaTTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATtcttcttct                                                                                                    >  1:907832/1‑140 (MQ=255)
                           ccagccaTTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATtcttcttct                                                                                                    >  2:703111/1‑140 (MQ=255)
                              gccaTTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGc                                                                                                 >  2:1064233/1‑140 (MQ=255)
                              gccaTTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGc                                                                                                 >  2:891212/1‑140 (MQ=255)
                              gccaTTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGc                                                                                                 >  2:1342899/1‑140 (MQ=255)
                              gccaTTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGC‑CCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCt                                                                                                >  1:326095/1‑140 (MQ=255)
                              gccaTTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAAGACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGc                                                                                                 >  1:428682/1‑140 (MQ=255)
                               ccaTTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCt                                                                                                >  2:1063071/1‑140 (MQ=255)
                                caTTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCtc                                                                                               >  2:761846/1‑140 (MQ=255)
                                  ttttttACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCtcgt                                                                                             <  1:1394185/140‑1 (MQ=255)
                                              acaGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCa                                                                                 >  1:764981/1‑140 (MQ=255)
                                                  ccAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTc                                                                             >  1:402788/1‑140 (MQ=255)
                                                                gCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCAt                                                               >  1:70040/1‑140 (MQ=255)
                                                                 cccTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATc                                                              >  2:1323230/1‑140 (MQ=255)
                                                                 cccTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATc                                                              >  2:647012/1‑140 (MQ=255)
                                                                 cccTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATc                                                              >  2:1220529/1‑140 (MQ=255)
                                                                    tAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTT‑CGGAGCGATTTCATCGTcc                                                          <  1:330688/140‑1 (MQ=255)
                                                                           aCAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTccc                                                    >  2:490708/1‑140 (MQ=255)
                                                                           aCAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTcc                                                    >  1:154414/1‑140 (MQ=255)
                                                                           aCAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTcc                                                    >  2:719012/1‑140 (MQ=255)
                                                                           aCAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTcc                                                    >  2:1230347/1‑140 (MQ=255)
                                                                            cAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCcg                                                   >  2:1082476/1‑140 (MQ=255)
                                                                              aaaGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGCCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGAtt                                                                   <  2:1313843/122‑1 (MQ=255)
                                                                              aaaGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGCCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGAtt                                                                   >  1:1313843/1‑122 (MQ=255)
                                                                                 gCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCa                                              <  2:370637/140‑1 (MQ=255)
                                                                                 gCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCa                                              <  1:1045299/140‑1 (MQ=255)
                                                                                   ccAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACt                                            <  1:1012754/140‑1 (MQ=255)
                                                                                      gACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGcc                                         >  2:593859/1‑140 (MQ=255)
                                                                                        cTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGt                                       <  1:1323230/140‑1 (MQ=255)
                                                                                           tGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGa                                    <  2:96945/140‑1 (MQ=255)
                                                                                           tGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGa                                    >  2:422553/1‑140 (MQ=255)
                                                                                             cAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATg                                  <  1:42295/140‑1 (MQ=255)
                                                                                             cAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATg                                  <  1:1064233/140‑1 (MQ=255)
                                                                                             cAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATg                                  <  1:422553/140‑1 (MQ=255)
                                                                                             cAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATg                                  <  2:1366042/140‑1 (MQ=255)
                                                                                             cAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATg                                  <  2:428682/140‑1 (MQ=255)
                                                                                             cAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATg                                  <  2:341166/140‑1 (MQ=255)
                                                                                             cAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATg                                  <  1:768522/140‑1 (MQ=255)
                                                                                                   ggACTTTTCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATcc                            >  2:153213/1‑140 (MQ=255)
                                                                                                       ttttCAATTCAAACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTCCCGCGGCACTGCCGTCGATGGTATCCAGAt                        <  1:490708/140‑1 (MQ=255)
                                                                                                               tcaaACAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCg                <  2:402788/140‑1 (MQ=255)
                                                                                                                   aCAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCaa            <  1:1063071/140‑1 (MQ=255)
                                                                                                                   aCAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCaa            >  1:1106210/1‑140 (MQ=255)
                                                                                                                    cAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCAAc           <  1:153213/140‑1 (MQ=255)
                                                                                                                    cAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCAAc           <  1:1336144/140‑1 (MQ=255)
                                                                                                                    cAAGGGAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCAAc           <  2:764981/140‑1 (MQ=255)
                                                                                                                       gggAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCAACCgg        <  1:593859/140‑1 (MQ=255)
                                                                                                                       gggAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCAACCgg        <  1:930767/140‑1 (MQ=255)
                                                                                                                       gggAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCAACCgg        <  1:784246/140‑1 (MQ=255)
                                                                                                                        ggAGATAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCAACCGGt       >  2:1400571/1‑140 (MQ=255)
                                                                                                                           gaTAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCAACCGGTTCa    >  1:111759/1‑140 (MQ=255)
                                                                                                                           gaTAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCAACCGGTTCa    >  1:125776/1‑140 (MQ=255)
                                                                                                                            aTAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCAACCGGTTCAg   >  2:1397464/1‑140 (MQ=255)
                                                                                                                            aTAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGATATCCAGATCTTCCTCGTCAACCGGTTCAg   >  2:864408/1‑140 (MQ=255)
                                                                                                                             tAGCCCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCAACCGGTTCAGc  <  2:1106210/140‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                       
ACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAGCCCAGACTTTGCAGCCTGGACTTTTCAATTCAAACAAGGGAGATAGCTCCCTTTTGGCATGAAGAAGTAAAATTATTCTTCTTCTGGCTCGTCGTCAACGTCCACTTCCGGAGCGATTTCATCGTCCCCTTCCGCGGCACTGCCGTCGATGGTATCCAGATCTTCCTCGTCAACCGGTTCAGC  >  NC_000913/2336639‑2336903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A