Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	159	82.1	2830106	99.3%	2810295	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,513,460	T→C	V140A (GTC→GCC)	nupC →	nucleoside:H(+) symporter NupC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,513,460	0	T	C	100.0%	391.8 / NA	105	V140A (GTC→GCC)	nupC	nucleoside:H(+) symporter NupC
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (48/57); total (48/57)

Only 100 of 109 total aligned reads displayed.

CTGTGCCCAATCGTCTTTATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGTCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCGTGTCGATGTCCATCGTTGGTGCATA  >  NC_000913/2513324‑2513595

cTGTGCCCAATCGTCTTTATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAg                                                                                                                                      <  1:309379/140‑1 (MQ=255)

cTGTGCCCAATCGTCTTTATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAg                                                                                                                                      <  2:1403560/140‑1 (MQ=255)

cTGTGCCCAATCGTCTTTATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAg                                                                                                                                      >  1:844848/1‑140 (MQ=255)

cTGTGCCCAATCGTCTTTATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAg                                                                                                                                      >  2:743014/1‑140 (MQ=255)

 tgtgCCCAATCGTCTTTATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGc                                                                                                                                     >  1:154922/1‑140 (MQ=255)

  gtgCCCAATCGTCTTTATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCATTTAACGCCGCCAGCt                                                                                                                                    <  1:407105/140‑1 (MQ=255)

    gCCCAATCGTCTTTATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTcc                                                                                                                                  <  2:1083956/140‑1 (MQ=255)

    gCCCAATCGTCTTTATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTcc                                                                                                                                  >  1:974891/1‑140 (MQ=255)

      ccAATCGTCTTTATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGTTCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCt                                                                                                                                <  2:60689/140‑1 (MQ=255)

        aaTCGTCTTTATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGa                                                                                                                              >  1:503499/1‑140 (MQ=255)

               tttATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTggg                                                                                                                       >  1:443450/1‑140 (MQ=255)

                ttATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGt                                                                                                                      <  2:894170/140‑1 (MQ=255)

                 tATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTc                                                                                                                     <  1:743014/140‑1 (MQ=255)

                    ctctGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGt                                                                                                                  <  2:154922/140‑1 (MQ=255)

                      ctGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCt                                                                                                                >  1:742905/1‑140 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTc                                                                                                                     >  1:875175/1‑127 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTc                                                                                                                     <  2:875175/127‑1 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACtt                                                                                                        >  1:62166/1‑140 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACtt                                                                                                        >  1:570763/1‑140 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACtt                                                                                                        >  2:755671/1‑140 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACtt                                                                                                        >  1:509422/1‑140 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACtt                                                                                                        >  2:670127/1‑140 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACtt                                                                                                        >  2:630211/1‑140 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACtt                                                                                                        >  2:132811/1‑140 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACtt                                                                                                        >  2:268792/1‑140 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACtt                                                                                                        >  2:361910/1‑140 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACtt                                                                                                        >  2:383119/1‑140 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACtt                                                                                                        >  1:1088179/1‑140 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACtt                                                                                                        >  2:46040/1‑140 (MQ=255)

                              aTCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCACCAGCTCCCTGATTCTGGGTCAGTCTGAAAACtt                                                                                                        >  2:293102/1‑140 (MQ=255)

                                cGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCACCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTa                                                                                                      <  1:293102/140‑1 (MQ=255)

                                 ggTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTAt                                                                                                     <  1:486114/140‑1 (MQ=255)

                                 ggTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTAt                                                                                                     <  1:630211/140‑1 (MQ=255)

                                 ggTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTAt                                                                                                     <  2:443450/140‑1 (MQ=255)

                                  gTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTAtt                                                                                                    <  2:503499/140‑1 (MQ=255)

                                  gTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTAtt                                                                                                    <  1:918526/140‑1 (MQ=255)

                                  gTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTAtt                                                                                                    <  1:698356/140‑1 (MQ=255)

                                  gTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTAtt                                                                                                    <  1:375018/140‑1 (MQ=255)

                                   tATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTg                                                                                                   <  1:755671/140‑1 (MQ=255)

                                   tATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTg                                                                                                   >  1:1252678/1‑140 (MQ=255)

                                      tctcCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCt                                                                                                >  2:589323/1‑140 (MQ=255)

                                      tctcCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCt                                                                                                <  2:62166/140‑1 (MQ=255)

                                        tcCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCtat                                                                                              >  1:338320/1‑140 (MQ=255)

                                             cacaTTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGa                                                                                         >  1:118336/1‑140 (MQ=255)

                                                 ttCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATc                                                                                     <  2:611488/140‑1 (MQ=255)

                                                  tCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATcc                                                                                    >  2:460266/1‑140 (MQ=255)

                                                  tCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATcc                                                                                    >  2:170580/1‑140 (MQ=255)

                                                  tCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATcc                                                                                    >  2:947375/1‑140 (MQ=255)

                                                  tCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATcc                                                                                    >  1:108482/1‑140 (MQ=255)

                                                  tCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATcc                                                                                    >  2:1338105/1‑140 (MQ=255)

                                                  tCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATcc                                                                                    >  2:1297119/1‑140 (MQ=255)

                                                  tCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATcc                                                                                    >  1:99142/1‑140 (MQ=255)

                                                     cgTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCg                                                                                 <  2:890132/140‑1 (MQ=255)

                                                          tGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCaaa                                                                            >  1:1219886/1‑140 (MQ=255)

                                                          tGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCaaa                                                                            <  1:291913/140‑1 (MQ=255)

                                                               gTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAAtctc                                                                       >  2:1027039/1‑140 (MQ=255)

                                                                  atcatcCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCg                                                                    <  1:591448/140‑1 (MQ=255)

                                                                      tcCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAAtctc                                                                       >  1:1257322/1‑133 (MQ=255)

                                                                      tcCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAAtctc                                                                       <  2:1257322/133‑1 (MQ=255)

                                                                      tcCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAAt                                                                <  1:992699/140‑1 (MQ=255)

                                                                      tcCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAAt                                                                <  1:46040/140‑1 (MQ=255)

                                                                      tcCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAAt                                                                <  1:132811/140‑1 (MQ=255)

                                                                      tcCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAAt                                                                <  2:404173/140‑1 (MQ=255)

                                                                      tcCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAAt                                                                <  2:1095947/140‑1 (MQ=255)

                                                                      tcCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAAt                                                                <  1:360676/140‑1 (MQ=255)

                                                                       ccGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATc                                                               <  2:742905/140‑1 (MQ=255)

                                                                       ccGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGAGTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATc                                                               <  2:524942/140‑1 (MQ=255)

                                                                           gcAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTAt                                                           <  1:947375/140‑1 (MQ=255)

                                                                            cAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATg                                                          <  1:589323/140‑1 (MQ=255)

                                                                            cAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATg                                                          >  2:42610/1‑140 (MQ=255)

                                                                               ttGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAAt                                                                <  1:106614/131‑1 (MQ=255)

                                                                               ttGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAAt                                                                >  2:106614/1‑131 (MQ=255)

                                                                                      ccTGCTCACCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAATTCTCCCGTAATCGTATGTACACCATgg                                                <  2:830687/140‑1 (MQ=255)

                                                                                         gCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTg                                             >  1:1383191/1‑140 (MQ=255)

                                                                                         gCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTg                                             >  2:499118/1‑140 (MQ=255)

                                                                                          ctctCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGc                                            <  2:1088179/140‑1 (MQ=255)

                                                                                             tcCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAACTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCAc                                         >  2:846554/1‑140 (MQ=255)

                                                                                              ccAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACg                                        <  2:99142/140‑1 (MQ=255)

                                                                                              ccAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACg                                        <  1:956326/140‑1 (MQ=255)

                                                                                               cAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATGTCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACgg                                       <  1:361910/140‑1 (MQ=255)

                                                                                               cAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACgg                                       <  2:974891/140‑1 (MQ=255)

                                                                                               cAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACgg                                       <  1:268792/140‑1 (MQ=255)

                                                                                                 aaGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCa                                     >  1:799022/1‑140 (MQ=255)

                                                                                                   gTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAAt                                   <  2:1029413/140‑1 (MQ=255)

                                                                                                       aCGGCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACgg                                       <  2:962609/132‑1 (MQ=255)

                                                                                                          gCATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCAcc                            <  2:171745/140‑1 (MQ=255)

                                                                                                           cATGGGCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCg                           <  2:108482/140‑1 (MQ=255)

                                                                                                              gggCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCgtgt                        >  2:683357/1‑140 (MQ=255)

                                                                                                              gggCAAACTGGAATCCTTTAACGCCACCAGCTCCCTGATTCTGGGTCAGTCGGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCgtgt                        >  2:1000635/1‑140 (MQ=255)

                                                                                                                gCAAACTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCGTGTCg                      >  1:743945/1‑140 (MQ=255)

                                                                                                                    aCTGGAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCGTGTCGATGt                  >  2:650906/1‑140 (MQ=255)

                                                                                                                        gAATCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCGTGTCGATGTCCAt              <  1:650906/140‑1 (MQ=255)

                                                                                                                          aTCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCGTGTCGATGTCCATCg            <  2:415159/140‑1 (MQ=255)

                                                                                                                           tCCTTTAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCGTGTCGATGTCCATCGt           <  1:1027039/140‑1 (MQ=255)

                                                                                                                               ttAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCGTGTCGATGTCCATCGTTGGt       <  2:221264/140‑1 (MQ=255)

                                                                                                                               ttAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGCCCACCGTGTCGATGTCCATCGTTGGt       <  2:362548/140‑1 (MQ=255)

                                                                                                                                tAACGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCGTGTCGATGTCCATCGTTGGTg      <  1:368800/140‑1 (MQ=255)

                                                                                                                                 aaCGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCCCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCGTGTCGATGTCCATCGTTGGtcc     <  2:844848/140‑3 (MQ=255)

                                                                                                                                  aCGCCGCCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCGTGTCGATGTCCATCGTTGGTGCa    <  1:460266/140‑1 (MQ=255)

                                                                                                                                    gccgccAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCGTGTCGATGTCCATCGTTGGTGCATa  <  1:1338105/140‑1 (MQ=255)

CTGTGCCCAATCGTCTTTATCTCTGCACTGATCGGTATTCTCCAGCACATTCGCGTGTTGCCGGTGATCATCCGCGCAATTGGTTTCCTGCTCTCCAAAGTCAACGGCATGGGCAAACTGGAATCCTTTAACGCCGTCAGCTCCCTGATTCTGGGTCAGTCTGAAAACTTTATTGCCTATAAAGATATCCTCGGCAAAATCTCCCGTAATCGTATGTACACCATGGCTGCCACGGCAATGTCCACCGTGTCGATGTCCATCGTTGGTGCATA  >  NC_000913/2513324‑2513595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A