Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,870,137 T→C T46T (ACA→ACG)  umpG ← broad specificity 5'(3')‑nucleotidase and polyphosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,870,1370TC100.0% 346.1 / NA 91T46T (ACA→ACG) umpGbroad specificity 5'(3')‑nucleotidase and polyphosphatase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (34/57);  total (34/57)

AATTCCGGACACAACAATGTCCGGGCGCGGACGCATCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGTGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGTCATCATTACTCAGCAATATGC  >  NC_000913/2870002‑2870270
                                                                                                                                       |                                                                                                                                     
aaTTCCGGACACAACAATGTCCGGGCGCGGACGCATCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCa                                                                                                                                   <  2:1047087/140‑1 (MQ=255)
 aTTCCGGACACAACAATGTCCGGGCGCGGACGCATCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCag                                                                                                                                  <  2:627916/140‑1 (MQ=255)
 aTTCCGGACACAACAATGTCCGGGCGCGGACGCATCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCag                                                                                                                                  <  1:24828/140‑1 (MQ=255)
            aacaaTGTCCGGGCGCGGACGCATCAGGGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAg                                                                                                                       >  2:1039749/1‑140 (MQ=255)
            aacaaTGTCCGGGCGCGGACGCATCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAg                                                                                                                       >  2:288431/1‑140 (MQ=255)
            aacaaTGTCCGGGCGCGGACGCATCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAg                                                                                                                       >  1:215801/1‑140 (MQ=255)
                   tCCGGGCGCGGACGCATCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATTTCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCt                                                                                                                >  2:1005994/1‑140 (MQ=255)
                   tCCGGGCGCGGACGCATCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCt                                                                                                                <  2:337237/140‑1 (MQ=255)
                   tCCGGGCGCGGACGCATCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCt                                                                                                                <  2:332129/140‑1 (MQ=255)
                   tCCGGGCGCGGACGCATCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCt                                                                                                                <  2:1360214/140‑1 (MQ=255)
                    ccGGGCGCGGACGCATCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGGACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTg                                                                                                               >  2:966448/1‑140 (MQ=255)
                    ccGGGCGCGGACGCATCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTg                                                                                                               >  2:637155/1‑140 (MQ=255)
                             gACGCATCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGa                                                                                                      >  2:183424/1‑140 (MQ=255)
                                   tCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCgggg                                                                                                <  2:771987/140‑1 (MQ=255)
                                            tCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGaccacc                                                                                       >  2:254367/1‑140 (MQ=255)
                                            tCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGaccacc                                                                                       >  1:1324923/1‑140 (MQ=255)
                                                gCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGaa                                                                                   >  1:90840/1‑140 (MQ=255)
                                                 ccAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAAc                                                                                  >  2:881015/1‑140 (MQ=255)
                                                     gATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCa                                                                              >  1:1395890/1‑140 (MQ=255)
                                                      aTAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAg                                                                             <  1:1331700/140‑1 (MQ=255)
                                                         gACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCaa                                                                          >  2:862715/1‑140 (MQ=255)
                                                          aCGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGAGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGCTACGATCGGGGGCGACCACCTGAACGTCAGCaaa                                                                         >  2:671884/1‑140 (MQ=255)
                                                            gCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACt                                                                       <  1:183424/140‑1 (MQ=255)
                                                               aTCGGTCGGGGTTCTCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCAc                                                                    >  1:1052936/1‑140 (MQ=255)
                                                               aTCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCAc                                                                    >  2:1386329/1‑140 (MQ=255)
                                                                tcggtcggGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACg                                                                   <  1:881015/140‑1 (MQ=255)
                                                                tcggtcggGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACg                                                                   >  2:105751/1‑140 (MQ=255)
                                                                            cccATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCtt                                                           <  2:754938/136‑1 (MQ=255)
                                                                            cccATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCtt                                                           <  2:2378/136‑1 (MQ=255)
                                                                            cccATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCtt                                                           >  1:2378/1‑136 (MQ=255)
                                                                            cccATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCtt                                                           >  1:754938/1‑136 (MQ=255)
                                                                             ccATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGcc                                                      <  1:475180/140‑1 (MQ=255)
                                                                             ccATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGcc                                                      <  1:259018/140‑1 (MQ=255)
                                                                              cATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAGCGTCAGCAAACTCACGCAAGGCTTTCGCCa                                                     >  2:286117/1‑140 (MQ=255)
                                                                               aTTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    <  2:1395890/140‑1 (MQ=255)
                                                                               aTTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    <  2:1388009/140‑1 (MQ=255)
                                                                               aTTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    <  1:948067/140‑1 (MQ=255)
                                                                               aTTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    <  2:1052936/140‑1 (MQ=255)
                                                                               aTTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    <  2:1100792/140‑1 (MQ=255)
                                                                               aTTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    <  1:1042951/140‑1 (MQ=255)
                                                                               aTTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    <  1:817733/140‑1 (MQ=255)
                                                                               aTTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    <  1:671884/140‑1 (MQ=255)
                                                                               aTTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    <  2:674027/140‑1 (MQ=255)
                                                                               aTTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    <  2:772232/140‑1 (MQ=255)
                                                                               aTTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    <  2:865313/140‑1 (MQ=255)
                                                                               aTTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    <  2:90840/140‑1 (MQ=255)
                                                                               aTTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    <  1:1386329/140‑1 (MQ=255)
                                                                                 ttGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCg                                                  <  1:105751/140‑1 (MQ=255)
                                                                                         cAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGtata                                          <  1:288431/140‑1 (MQ=255)
                                                                                          aaTATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATAc                                         <  1:637155/140‑1 (MQ=255)
                                                                                            tatCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCg                                       <  1:829137/140‑1 (MQ=255)
                                                                                            tatCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCg                                       <  1:260963/140‑1 (MQ=255)
                                                                                            tatCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCg                                       <  1:16998/140‑1 (MQ=255)
                                                                                            tatCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCg                                       <  2:1296663/140‑1 (MQ=255)
                                                                                             ttCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCgg                                      <  1:1005994/139‑1 (MQ=255)
                                                                                              tCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAGCGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCggg                                     <  1:286117/140‑1 (MQ=255)
                                                                                              tCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCggg                                     <  1:368847/140‑1 (MQ=255)
                                                                                              tCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCggg                                     <  1:405777/140‑1 (MQ=255)
                                                                                               cACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGt                                    <  2:20864/140‑1 (MQ=255)
                                                                                                 ccATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    >  1:51577/1‑122 (MQ=255)
                                                                                                 ccATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAg                                                    <  2:51577/122‑1 (MQ=255)
                                                                                                   aTTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGTGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCAt                                >  1:264507/1‑140 (MQ=255)
                                                                                                   aTTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCg                                       <  1:48949/133‑1 (MQ=255)
                                                                                                   aTTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCg                                       >  2:48949/1‑133 (MQ=255)
                                                                                                   aTTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCAt                                <  2:734145/140‑1 (MQ=255)
                                                                                                    ttttCAAAGGTAAACGTGCGCAGGGAGGACTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATg                               >  1:1041460/1‑140 (MQ=255)
                                                                                                     tttCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGt                              >  2:694368/1‑140 (MQ=255)
                                                                                                      tttaaaGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTa                             >  1:1252692/4‑140 (MQ=255)
                                                                                                      ttCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTa                             >  1:1361303/1‑140 (MQ=255)
                                                                                                      ttCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTa                             >  1:205392/1‑140 (MQ=255)
                                                                                                      ttCAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTa                             >  2:1097692/1‑140 (MQ=255)
                                                                                                        cAAAGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTAcc                           <  2:776987/140‑1 (MQ=255)
                                                                                                          aaGGTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTAcccc                         <  1:1097692/140‑1 (MQ=255)
                                                                                                            ggTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGt                       <  1:254367/140‑1 (MQ=255)
                                                                                                            ggTAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGt                       <  1:893359/140‑1 (MQ=255)
                                                                                                              tAAACGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGtca                     >  1:1120573/1‑140 (MQ=255)
                                                                                                               aaaCGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGtcat                    <  1:45266/140‑1 (MQ=255)
                                                                                                               aaaCGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGtcat                    <  1:1287494/140‑1 (MQ=255)
                                                                                                               aaaCGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGtcat                    >  2:45266/1‑140 (MQ=255)
                                                                                                                aaCGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGtcatc                   >  2:6872/1‑140 (MQ=255)
                                                                                                                aaCGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGtcatc                   >  1:959184/1‑140 (MQ=255)
                                                                                                                 aCGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGtcatca                  <  1:1039749/140‑1 (MQ=255)
                                                                                                                 aCGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGtcatca                  <  2:1381717/140‑1 (MQ=255)
                                                                                                                 aCGTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGtcatca                  <  2:1120573/140‑1 (MQ=255)
                                                                                                                   gTGCGCAGGGAGGATTCCAGCGTCAGAGAATTTGAAGTGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGTCATCAtt                <  2:264507/140‑1 (MQ=255)
                                                                                                                     gcgcAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGTCATCATTAc              <  1:808379/140‑1 (MQ=255)
                                                                                                                       gcAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGTCATCATTACTc            >  2:69957/1‑140 (MQ=255)
                                                                                                                       gcAGGGAGGATTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGTCATCATTACTc            <  2:215801/140‑1 (MQ=255)
                                                                                                                           ggaggaTTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGTCATCATTACTCAGCa        >  1:613150/1‑140 (MQ=255)
                                                                                                                             aggaTTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGTCATCATTACTCAGCAat      <  1:69957/140‑1 (MQ=255)
                                                                                                                                aTTCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGTCATCATTACTCAGCAATATg   <  2:1324923/140‑1 (MQ=255)
                                                                                                                                 ctCCAGCGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGTCATCATTACTCAGCAATATgc  <  2:1041460/139‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                     
AATTCCGGACACAACAATGTCCGGGCGCGGACGCATCAGAGCATTCACGCCAAGATAGACGCAATCGGTCGGGGTTCCCATTTGCACAGCAATATCACCATTTTCAAAGGTAAACGTGCGCAGGGAGGATTCCAGTGTCAGAGAATTTGAAGCGCCGCTGCGGTTACGATCGGGGGCGACCACCTGAACGTCAGCAAACTCACGCAAGGCTTTCGCCAGCGTTTGTATACCGGGTGCATGTACCCCGTCATCATTACTCAGCAATATGC  >  NC_000913/2870002‑2870270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A