Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,557,086 A→G F332L (TTC→CTC)  rtcB ← RNA‑splicing ligase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,557,0860AG100.0% 340.1 / NA 91F332L (TTC→CTC) rtcBRNA‑splicing ligase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (43/48);  total (43/48)

CGGGATTTCGTCGATCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAACGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGATCTCTTCACCAAAGTGCTGTTC  >  NC_000913/3556949‑3557221
                                                                                                                                         |                                                                                                                                       
cGGGATTTCGTCGATCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCg                                                                                                                                       >  1:399485/1‑140 (MQ=255)
cGGGATTTCGTCGATCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCg                                                                                                                                       >  1:308475/1‑140 (MQ=255)
cGGGATTTCGTCGATCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCg                                                                                                                                       >  1:862199/1‑140 (MQ=255)
cGGGATTTCGTCGATCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCg                                                                                                                                       >  1:1410938/1‑140 (MQ=255)
 gggATTTCGTCGATCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGa                                                                                                                                      <  2:314984/140‑1 (MQ=255)
   gATTTCGTCGATCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGAct                                                                                                                                    <  1:286329/140‑1 (MQ=255)
       tcgtcgATCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTc                                                                                                                                <  2:308475/140‑1 (MQ=255)
        cgtcgATCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCa                                                                                                                               <  1:177036/140‑1 (MQ=255)
         gtcgATCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCGCGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCAt                                                                                                                              >  1:149379/1‑140 (MQ=255)
         gtcgATCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCAt                                                                                                                              >  1:866745/1‑140 (MQ=255)
             aTCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTcc                                                                                                                          <  1:569718/140‑1 (MQ=255)
             aTCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTCCGGCTCATTACCCGCCCGGCACCGTGGCTCCACGAACAGAGCGACTCTTCATTTcc                                                                                                                          <  2:357726/140‑1 (MQ=255)
              tCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCGCGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTccc                                                                                                                         <  2:149379/140‑1 (MQ=255)
              tCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTccc                                                                                                                         <  1:1242562/140‑1 (MQ=255)
                  ttCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGcc                                                                                                                     >  1:1211432/1‑140 (MQ=255)
                  ttCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGcc                                                                                                                     >  1:329692/1‑140 (MQ=255)
                  ttCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGcc                                                                                                                     >  1:821099/1‑140 (MQ=255)
                            ttACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGccc                                                                                                                    >  1:1316567/1‑131 (MQ=255)
                            ttACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGAt                                                                                                           >  1:1275748/1‑140 (MQ=255)
                            ttACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGAt                                                                                                           <  2:1343906/140‑1 (MQ=255)
                            ttACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTACTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGccc                                                                                                                    <  2:1316567/131‑1 (MQ=255)
                               cGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATaaa                                                                                                        <  2:523492/140‑1 (MQ=255)
                                    ttCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCttt                                                                                                   >  2:417779/1‑140 (MQ=255)
                                     tCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATa                                                                                                          <  2:601686/132‑1 (MQ=255)
                                     tCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATa                                                                                                          >  1:601686/1‑132 (MQ=255)
                                     tCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCtttt                                                                                                  >  2:1108794/1‑140 (MQ=255)
                                     tCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCtttt                                                                                                  >  2:26413/1‑140 (MQ=255)
                                     tCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCtttt                                                                                                  >  2:232862/1‑140 (MQ=255)
                                      ccACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCttttt                                                                                                 >  1:1215035/1‑140 (MQ=255)
                                              gcgGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCAt                                                                                         >  1:96095/1‑140 (MQ=255)
                                                 gTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGa                                                                                      >  2:381623/1‑140 (MQ=255)
                                                 gTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCAAGGACGATAAAGCTTTTTGCTCCCATCGa                                                                                      >  1:237371/1‑140 (MQ=255)
                                                  tGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGaa                                                                                     <  1:381623/140‑1 (MQ=255)
                                                    gCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAAcc                                                                                   <  1:33085/140‑1 (MQ=255)
                                                    gCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAAcc                                                                                   <  1:499300/140‑1 (MQ=255)
                                                    gCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAAcc                                                                                   <  2:426050/140‑1 (MQ=255)
                                                    gCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAAcc                                                                                   <  1:1165405/140‑1 (MQ=255)
                                                     cACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCg                                                                                  >  2:561284/1‑140 (MQ=255)
                                                       cGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCggg                                                                                <  2:96095/140‑1 (MQ=255)
                                                         aaTTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGaa                                                                              <  2:821099/140‑1 (MQ=255)
                                                         aaTTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGaa                                                                              <  2:329692/140‑1 (MQ=255)
                                                         aaTTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGaa                                                                              <  2:1211432/140‑1 (MQ=255)
                                                         aaTTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGaa                                                                              <  1:232862/140‑1 (MQ=255)
                                                         aaTTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGaa                                                                              <  1:470778/140‑1 (MQ=255)
                                                         aaTTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGaa                                                                              <  1:474081/140‑1 (MQ=255)
                                                          aTTTTATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGaat                                                                             >  1:971836/1‑140 (MQ=255)
                                                                    ccACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCatat                                                                   >  2:663852/1‑140 (MQ=255)
                                                                    ccACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCatat                                                                   >  1:1385715/1‑140 (MQ=255)
                                                                    ccACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCatat                                                                   >  2:1222455/1‑140 (MQ=255)
                                                                    ccACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCatat                                                                   >  1:881657/1‑140 (MQ=255)
                                                                    ccACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCat                                                                     >  2:289705/1‑138 (MQ=255)
                                                                    ccACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCat                                                                     <  1:289705/138‑1 (MQ=255)
                                                                     cACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATAtt                                                                  >  2:904155/1‑140 (MQ=255)
                                                                         cTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGAcc                                                              >  2:1161602/1‑140 (MQ=255)
                                                                           gAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAg                                                            <  2:1275748/140‑1 (MQ=255)
                                                                           gAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAg                                                            <  1:1134666/140‑1 (MQ=255)
                                                                           gAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAg                                                            <  2:866745/140‑1 (MQ=255)
                                                                           gAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAg                                                            <  1:599884/140‑1 (MQ=255)
                                                                           gAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAg                                                            <  1:1297538/140‑1 (MQ=255)
                                                                            aaCAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAg                                                            <  2:1287602/139‑1 (MQ=255)
                                                                            aaCAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAg                                                            >  1:1287602/1‑139 (MQ=255)
                                                                            aaCAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGc                                                           <  2:862199/140‑1 (MQ=255)
                                                                            aaCAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGc                                                           >  1:294176/1‑140 (MQ=255)
                                                                            aaCAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGc                                                           >  1:642683/1‑140 (MQ=255)
                                                                             aCAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCa                                                          <  1:1336885/140‑1 (MQ=255)
                                                                             aCAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCa                                                          <  1:1013211/140‑1 (MQ=255)
                                                                             aCAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCa                                                          <  2:147435/140‑1 (MQ=255)
                                                                                 ttttttCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCAcgcg                                                      >  2:713433/1‑140 (MQ=255)
                                                                                 ttttttCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCAcgcg                                                      >  1:805015/1‑140 (MQ=255)
                                                                                   ttttCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCa                                                    >  1:915483/1‑140 (MQ=255)
                                                                                         cTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACAcc                                              <  2:62100/140‑1 (MQ=255)
                                                                                                    cTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTAcg                                   >  1:1087599/1‑140 (MQ=255)
                                                                                                      cATTCCCCGCCCGGCCCCGTGGCTGCAGGAACAGAGCGACTCTTCATTTCCCAGCCCCCGGACGATAACGCTTTTTGCTCTCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTAcgcg                                 <  2:978713/140‑1 (MQ=255)
                                                                                                      cATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTAcgcg                                 <  2:399485/140‑1 (MQ=255)
                                                                                                      cATTACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTAcgcg                                 <  1:805655/140‑1 (MQ=255)
                                                                                                        ttACCTGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTc                               <  2:1251137/140‑1 (MQ=255)
                                                                                                        ttACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTc                               <  2:294176/140‑1 (MQ=255)
                                                                                                        ttACCCGCCCGGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTc                               <  2:881657/140‑1 (MQ=255)
                                                                                                         tACCCCCCCGGCACCGTGGGTTCCCGAACAGGACGTCTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCa                              <  2:1215035/140‑1 (MQ=255)
                                                                                                                ccgGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTATGCGTCACGTAGAt                       <  1:125542/140‑1 (MQ=255)
                                                                                                                ccgGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGAt                       <  2:457039/140‑1 (MQ=255)
                                                                                                                ccgGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGAt                       <  2:642683/140‑1 (MQ=255)
                                                                                                                ccgGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGAt                       <  2:800699/140‑1 (MQ=255)
                                                                                                                ccgGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGAt                       <  1:561284/140‑1 (MQ=255)
                                                                                                                 cgGCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGAtc                      >  2:1053527/1‑140 (MQ=255)
                                                                                                                   gCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGAtctc                    >  2:721634/1‑140 (MQ=255)
                                                                                                                   gCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGAtct                     >  2:360244/1‑139 (MQ=255)
                                                                                                                   gCACCGTGGCTGCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGAtct                     <  1:360244/139‑1 (MQ=255)
                                                                                                                              gCACGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGATCTCTTCACCAAAGt         >  1:625/1‑140 (MQ=255)
                                                                                                                                aCGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGATCTCTTCACCAAAGTGc       <  1:663852/140‑1 (MQ=255)
                                                                                                                                 cGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGATCTCTTCACCAAAGTGCt      >  2:778218/1‑140 (MQ=255)
                                                                                                                                 cGAACAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGATCTCTTCACCAAAGTGCt      >  2:349343/1‑140 (MQ=255)
                                                                                                                                     cAGAGCGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGATCTCTTCACCAAAGTGCTGTTc  >  1:1223596/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CGGGATTTCGTCGATCACTTCGGCATCTTTACGGCATTCCACATGCGCGGTGGCACGAATTTGATCTTCCACGCTGAACAGTTTTTTCGCTTTAGTTCGGCTCATTACCCGCCCGGCACCGTGGCTGCACGAACAGAACGACTCTTCATTTCCCAGCCCACGGACGATAAAGCTTTTTGCTCCCATCGAACCGGGAATAATTCCATATTGACCAGCACGCGCAGACACCGCGCCTTTACGCGTCACGTAGATCTCTTCACCAAAGTGCTGTTC  >  NC_000913/3556949‑3557221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A