Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,631,544 Δ1 bp coding (742/1284 nt) ydfJ ← putative transporter YdfJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,631,5420T.100.0% 298.6 / NA 69coding (744/1284 nt)ydfJputative transporter YdfJ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (39/30);  total (39/30)

GCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTACCAGCAGGTGCA  >  NC_000913/1631403‑1631677
                                                                                                                                           |                                                                                                                                       
gCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCt                                                                                                                                         >  1:759104/1‑140 (MQ=255)
    tGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCttgtt                                                                                                                                     <  2:696614/140‑4 (MQ=255)
    tGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCttgtt                                                                                                                                     <  2:308007/140‑4 (MQ=255)
          cacaATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACaa                                                                                                                              >  1:226922/1‑140 (MQ=255)
          cacaATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACaa                                                                                                                              >  1:399087/1‑140 (MQ=255)
           acaATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAAt                                                                                                                             <  2:1046783/140‑1 (MQ=255)
               tCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCttgtt                                                                                                                                     >  1:900975/1‑126 (MQ=255)
               tCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCttgtt                                                                                                                                     <  2:900975/129‑4 (MQ=255)
               tCGCGGAGGCATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACg                                                                                                                         >  2:274505/1‑140 (MQ=255)
                cgcgGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGt                                                                                                                        <  1:462448/140‑1 (MQ=255)
                cgcgGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGt                                                                                                                        <  2:602050/140‑1 (MQ=255)
                   ggAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTg                                                                                                                     <  2:226922/140‑1 (MQ=255)
                   ggAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTg                                                                                                                     <  1:15050/140‑1 (MQ=255)
                    gAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGc                                                                                                                    <  1:822943/140‑1 (MQ=255)
                    gAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGc                                                                                                                    <  2:759104/140‑1 (MQ=255)
                       gTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACt                                                                                                                 >  1:719678/1‑140 (MQ=255)
                               aataataTACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGcc                                                                                                         >  1:747467/1‑140 (MQ=255)
                                 taataTACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTg                                                                                                       >  1:447799/1‑140 (MQ=255)
                                 taataTACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTg                                                                                                       >  2:24806/1‑140 (MQ=255)
                                    tataCGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGc                                                                                                                    >  1:358752/1‑124 (MQ=255)
                                    tataCGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGc                                                                                                                    <  2:358752/124‑1 (MQ=255)
                                    tataCGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCaa                                                                                                    >  2:812106/1‑140 (MQ=255)
                                    tataCGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCaa                                                                                                    >  1:302825/1‑140 (MQ=255)
                                    tataCGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCaa                                                                                                    >  2:924602/1‑140 (MQ=255)
                                    tataCGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCaa                                                                                                    >  1:106049/1‑140 (MQ=255)
                                    tataCGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCaa                                                                                                    >  1:781952/1‑140 (MQ=255)
                                      taCGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAgg                                                                                                  <  2:399087/140‑1 (MQ=255)
                                       aCGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGa                                                                                                 >  2:265606/1‑140 (MQ=255)
                                       aCGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGa                                                                                                 >  1:1046046/1‑140 (MQ=255)
                                           gATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATa                                                                                                            <  1:817941/125‑1 (MQ=255)
                                           gATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATa                                                                                                            >  2:817941/1‑125 (MQ=255)
                                           gATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGt                                                                                             >  2:487321/1‑140 (MQ=255)
                                           gATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGt                                                                                             >  2:920009/1‑140 (MQ=255)
                                            aTCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTc                                                                                            >  1:354502/1‑140 (MQ=255)
                                              ccGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTg                                                                                          >  1:516767/1‑140 (MQ=255)
                                               cGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGa                                                                                         >  1:554051/1‑140 (MQ=255)
                                                ggCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGaa                                                                                        <  1:487321/140‑1 (MQ=255)
                                                     ccAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAAc                                                                                   <  1:776094/140‑1 (MQ=255)
                                                                    aaccaaccAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGcc                                                                    <  2:516767/140‑1 (MQ=255)
                                                                          ccaaGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCa                                                              <  2:590680/140‑1 (MQ=255)
                                                                              ggAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAAc                                                          >  2:415377/1‑140 (MQ=255)
                                                                                aaCGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGc                                                        >  1:479359/1‑140 (MQ=255)
                                                                                aaCGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGc                                                        >  1:336952/1‑140 (MQ=255)
                                                                                 aCGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACg                                                         >  2:693558/1‑138 (MQ=255)
                                                                                 aCGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACg                                                         <  1:693558/138‑1 (MQ=255)
                                                                                 aCGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCa                                                       <  2:781952/140‑1 (MQ=255)
                                                                                     aaTGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGcc                                                    <  1:540571/139‑1 (MQ=255)
                                                                                     aaTGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGcc                                                    >  2:540571/1‑139 (MQ=255)
                                                                                       tGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCa                                                              >  2:1058139/1‑127 (MQ=255)
                                                                                       tGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCa                                                              <  1:1058139/127‑1 (MQ=255)
                                                                                          tCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTg                                              <  2:106049/140‑1 (MQ=255)
                                                                                            aTAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTgcc                                            <  2:518506/140‑1 (MQ=255)
                                                                                               aaGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTgccagc                                         >  2:318247/1‑140 (MQ=255)
                                                                                                    gagaATCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGaa                                    >  1:854484/1‑140 (MQ=255)
                                                                                                        aTCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGAt                                <  2:719678/140‑1 (MQ=255)
                                                                                                        aTCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGAt                                <  2:336952/140‑1 (MQ=255)
                                                                                                        aTCGAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGAt                                <  2:854484/140‑1 (MQ=255)
                                                                                                           gAACTGATCATCAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTg                             <  1:991974/140‑1 (MQ=255)
                                                                                                                 atcatcAATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTgg                       >  2:422441/1‑140 (MQ=255)
                                                                                                                   catcaATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGaa                     >  2:830428/1‑140 (MQ=255)
                                                                                                                    atcaATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAAc                    <  1:318247/140‑1 (MQ=255)
                                                                                                                    atcaATGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAAc                    <  1:51447/140‑1 (MQ=255)
                                                                                                                         tGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCt               <  2:479359/140‑1 (MQ=255)
                                                                                                                         tGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCt               >  2:462871/1‑140 (MQ=255)
                                                                                                                         tGCATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCt               <  2:447799/140‑1 (MQ=255)
                                                                                                                           cATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTAc             >  2:997318/1‑140 (MQ=255)
                                                                                                                           cATCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTAc             >  1:290195/1‑140 (MQ=255)
                                                                                                                             tCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTACca           >  2:1074050/1‑140 (MQ=255)
                                                                                                                             tCTGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTACca           >  2:1046561/1‑140 (MQ=255)
                                                                                                                               tGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTACcagc         <  1:415377/140‑1 (MQ=255)
                                                                                                                               tGTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTACcagc         <  1:1046561/140‑1 (MQ=255)
                                                                                                                                gTTGGAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTACcagca        >  1:693335/1‑140 (MQ=255)
                                                                                                                                   ggAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTACCAgcaggt     >  1:781063/1‑140 (MQ=255)
                                                                                                                                   ggAATTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTACCAgcaggt     >  1:580591/1‑140 (MQ=255)
                                                                                                                                      aTTGC‑TTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTACCAgcaggtgca  >  2:648788/1‑140 (MQ=255)
                                                                                                                                           |                                                                                                                                       
GCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTACCAGCAGGTGCA  >  NC_000913/1631403‑1631677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A