Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	180	66.5	2263572	99.4%	2249990	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,976,588	G→A	V184V (GTC→GTT)	motA ←	motility protein A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,976,588	0	G	A	100.0%	141.5 / NA	43	V184V (GTC→GTT)	motA	motility protein A
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (21/22); total (21/22)

TTCTGACGTAAAACAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTG  >  NC_000913/1976451‑1976723

ttCTGACGTAAAACAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGaacaac                                                                                                                                       <  2:1048926/140‑1 (MQ=255)

            aCAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGc                                                                                                                           <  2:678130/140‑1 (MQ=255)

             cAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGcc                                                                                                                          <  2:351270/140‑1 (MQ=255)

               gTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGc                                                                                                                        >  1:1005962/1‑140 (MQ=255)

                  gCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCg                                                                                                                         >  1:558038/1‑136 (MQ=255)

                  gCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCg                                                                                                                         <  2:558038/136‑1 (MQ=255)

                          ggAAATAAATCCGTAAGCC‑ATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCaaa                                                                                                            <  1:242769/140‑1 (MQ=255)

                            aaataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAAc                                                                                                           >  1:251602/1‑140 (MQ=255)

                              ataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGc                                                                                                         >  2:1063715/1‑140 (MQ=255)

                                      gTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTg                                                                                                 <  2:251602/140‑1 (MQ=255)

                                       tAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGa                                                                                                >  1:650717/1‑140 (MQ=255)

                                                aaaaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGAc                                                                                       <  1:283014/140‑1 (MQ=255)

                                                aaaaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGAc                                                                                       <  1:981736/140‑1 (MQ=255)

                                                aaaaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGAc                                                                                       <  1:203178/140‑1 (MQ=255)

                                                aaaaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGAc                                                                                       <  1:877920/140‑1 (MQ=255)

                                                  aaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCa                                                                                     <  2:829975/140‑1 (MQ=255)

                                                     gCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAgcg                                                                                  >  2:431497/1‑140 (MQ=255)

                                                          ggAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGa                                                                             <  1:778293/140‑1 (MQ=255)

                                                                ttcccACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTc                                                                       >  2:578958/3‑140 (MQ=255)

                                                                         tCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACt                                                              >  2:309123/1‑140 (MQ=255)

                                                                         tCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACt                                                              >  1:442865/1‑140 (MQ=255)

                                                                                 gCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTc                                                      >  1:95968/1‑140 (MQ=255)

                                                                                 gCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTc                                                      >  2:630858/1‑140 (MQ=255)

                                                                                    aTAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCt                                                   >  2:883984/1‑140 (MQ=255)

                                                                                       aGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTc                                                >  2:1056628/1‑140 (MQ=255)

                                                                                         cgcACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGt                                              >  2:698998/1‑140 (MQ=255)

                                                                                           cACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGt                                              <  1:918935/138‑1 (MQ=255)

                                                                                           cACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGt                                              >  2:918935/1‑138 (MQ=255)

                                                                                            aCCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCg                                           >  2:432509/1‑140 (MQ=255)

                                                                                             cccAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGt                                          <  1:840096/140‑1 (MQ=255)

                                                                                              ccAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGtc                                         <  2:442865/140‑1 (MQ=255)

                                                                                                       cggcAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATctct                                <  1:1056628/140‑1 (MQ=255)

                                                                                                       cggcAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACCCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATctct                                >  2:76549/1‑140 (MQ=255)

                                                                                                          cAGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTca                             <  1:1063715/140‑1 (MQ=255)

                                                                                                           aGGACGATCGGCTGAACCTAACGCGTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTcat                            <  1:698998/140‑1 (MQ=255)

                                                                                                                                cgcgTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGa       <  2:95968/140‑1 (MQ=255)

                                                                                                                                cgcgTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGa       <  2:650717/140‑1 (MQ=255)

                                                                                                                                cgcgTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGa       <  2:1005962/140‑1 (MQ=255)

                                                                                                                                cgcgTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGa       <  1:883984/140‑1 (MQ=255)

                                                                                                                                  cgTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAg     <  1:309123/140‑1 (MQ=255)

                                                                                                                                   gTGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAgg    >  1:532040/1‑140 (MQ=255)

                                                                                                                                    tGAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGgt   >  1:940466/1‑140 (MQ=255)

                                                                                                                                     gAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGgtg  >  2:1030612/1‑140 (MQ=255)

                                                                                                                                     gAACAACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGgtg  >  1:247925/1‑140 (MQ=255)

TTCTGACGTAAAACAGTCGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTCGCCGGGACTTCTGCCTCGCTTTCGTGCGTCTCAATCTCTTCATCCATCAGAGCTTCGATTTCGAAGGTG  >  NC_000913/1976451‑1976723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A