Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,977,215 (A)8→7 intergenic (‑76/+51) motA ← / ← flhC motility protein A/DNA‑binding transcriptional dual regulator FlhC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,977,2080A.100.0% 257.5 / NA 60intergenic (‑69/+58)motA/flhCmotility protein A/DNA‑binding transcriptional dual regulator FlhC
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (28/32);  total (28/32)

CTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTTGTGGGATAATATCGGCAGGATTCTGGGA  >  NC_000913/1977069‑1977328
                                                                                                                                           |                                                                                                                        
cTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGCa                                                                                                                          >  1:67993/1‑140 (MQ=255)
  tCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGCaaa                                                                                                                        >  2:613247/1‑140 (MQ=255)
   ccACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGCaaaa                                                                                                                       >  1:634143/1‑140 (MQ=255)
                      cgccgAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGtt                                                                                                   >  1:1081754/1‑140 (MQ=255)
                        ccgAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTAc                                                                                                 <  2:539236/140‑1 (MQ=255)
                                  tACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGa                                                                                       <  1:321979/140‑1 (MQ=255)
                                   aCCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGaa                                                                                      >  1:920421/1‑140 (MQ=255)
                                         aacaacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACCTCGTTACCGCTGCTGGAATGTTgc                                                                                >  1:302120/1‑140 (MQ=255)
                                          acaacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTgcg                                                                               >  2:460437/1‑140 (MQ=255)
                                          acaacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTgcg                                                                               <  2:920421/140‑1 (MQ=255)
                                          acaacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTgcg                                                                               <  1:450040/140‑1 (MQ=255)
                                          acaacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTgcg                                                                               >  2:283420/1‑140 (MQ=255)
                                          acaacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTgcg                                                                               <  1:570291/140‑1 (MQ=255)
                                           caacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTgcgc                                                                              <  2:634143/140‑1 (MQ=255)
                                            aacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGcc                                                                             >  1:557822/1‑140 (MQ=255)
                                             acCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACCTCGTTACCGCTGCTGGAATGTTGCGCCt                                                                            <  2:302120/140‑1 (MQ=255)
                                                   tAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGt                                                                      <  2:729786/140‑1 (MQ=255)
                                                   tAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGt                                                                      >  1:275740/1‑140 (MQ=255)
                                                      ccTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATc                                                                   <  2:275740/140‑1 (MQ=255)
                                                      ccTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATc                                                                   >  1:731380/1‑140 (MQ=255)
                                                      ccTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATc                                                                   >  1:212075/1‑140 (MQ=255)
                                                       cTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCa                                                                  <  2:919845/140‑1 (MQ=255)
                                                        taataaGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAg                                                                 >  2:123170/1‑140 (MQ=255)
                                                            aagataagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTAt                                                                    >  1:624182/1‑133 (MQ=255)
                                                            aagataagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTAt                                                                    <  2:624182/133‑1 (MQ=255)
                                                            aagataagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTaa                                                             >  2:447133/1‑140 (MQ=255)
                                                             agataagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTaaa                                                            <  2:731380/140‑1 (MQ=255)
                                                              gataagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAc                                                           <  2:212075/140‑1 (MQ=255)
                                                              gataagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAc                                                           <  1:123170/140‑1 (MQ=255)
                                                                taagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAc                                                           >  2:503001/1‑138 (MQ=255)
                                                                taagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAc                                                           <  1:503001/138‑1 (MQ=255)
                                                                taagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAg                                                         <  2:851114/140‑1 (MQ=255)
                                                                taagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAg                                                         >  1:42187/1‑140 (MQ=255)
                                                                 aagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGc                                                        >  1:7837/1‑140 (MQ=255)
                                                                 aagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGc                                                        <  1:745871/140‑1 (MQ=255)
                                                                 aagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGc                                                        >  2:745871/1‑140 (MQ=255)
                                                                 aagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGc                                                        >  2:871723/1‑140 (MQ=255)
                                                                 aagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGc                                                        >  1:313820/1‑140 (MQ=255)
                                                                       gACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAc                                                           <  2:363801/131‑1 (MQ=255)
                                                                       gACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAc                                                           >  1:363801/1‑131 (MQ=255)
                                                                         catcatCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTActc                                                <  1:283420/140‑1 (MQ=255)
                                                                                 ttCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCa                                        <  1:717543/140‑1 (MQ=255)
                                                                                      cTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCcag                                   <  2:1081754/140‑1 (MQ=255)
                                                                                      cTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCcag                                   <  2:393553/140‑1 (MQ=255)
                                                                                         ttGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCcagcag                                >  2:505568/1‑140 (MQ=255)
                                                                                         ttGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCcagcag                                >  2:1112901/1‑140 (MQ=255)
                                                                                         ttGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCcagcag                                >  2:385436/1‑140 (MQ=255)
                                                                                         ttGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCcagcag                                <  1:613247/140‑1 (MQ=255)
                                                                                          tGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGt                               <  1:460437/140‑1 (MQ=255)
                                                                                           gACCATGAGAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑GAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGCTAAACAGCCTGTACTCTCTGCTCATCCAGCAGtt                              >  2:1037707/1‑140 (MQ=255)
                                                                                           gACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGtt                              <  1:493801/140‑1 (MQ=255)
                                                                                            aCCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTtg                             <  2:74389/140‑1 (MQ=255)
                                                                                            aCCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTtg                             >  1:663994/1‑140 (MQ=255)
                                                                                            aCCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTtg                             <  1:926706/140‑1 (MQ=255)
                                                                                            aCCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTtg                             >  2:164965/1‑140 (MQ=255)
                                                                                               aTGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTTGTgg                          <  2:7837/140‑1 (MQ=255)
                                                                                                   cAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTTGTggg                         >  1:823718/1‑137 (MQ=255)
                                                                                                   cAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTTGTggg                         <  2:823718/137‑1 (MQ=255)
                                                                                                   cAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTTGTGGGata                      <  2:67993/140‑1 (MQ=255)
                                                                                                      gATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTTGTGGGataata                   >  2:658995/1‑140 (MQ=255)
                                                                                                      gATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTTGTGGGataata                   >  2:927310/1‑140 (MQ=255)
                                                                                                            cAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTTGTGGGATAATATCGGCa             >  1:100310/1‑140 (MQ=255)
                                                                                                                       cGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTTGTGGGATAATATCGGCAGGATTCTGGGa  <  2:42187/140‑1 (MQ=255)
                                                                                                                       cGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTTGTGGGATAATATCGGCAGGATTCTGGGa  <  1:385436/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                        
CTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTTGTGGGATAATATCGGCAGGATTCTGGGA  >  NC_000913/1977069‑1977328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A