Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	180	66.5	2263572	99.4%	2249990	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,906,839	A→G	I368T (ATC→ACC)	eno ←	enolase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,906,839	0	A	G	100.0%	268.1 / NA	75	I368T (ATC→ACC)	eno	enolase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (45/30); total (45/30)

TTCGATACGAATCAGCTGGTTGTATTTAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGATAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACCTTCTTTCAGGATCTTGGTGT  >  NC_000913/2906703‑2906974

ttcGATACGAATCAGCTGGTTGTATTTAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTaa                                                                                                                                      >  2:1049943/1‑140 (MQ=255)

  cGATACGAATCAGCTGGTTGTATTTAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACt                                                                                                                                    <  1:607687/140‑1 (MQ=255)

   gATACGAATCAGCTGGTTGTATTTAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTg                                                                                                                                   <  1:501467/140‑1 (MQ=255)

    aTACGAATCAGCTGGTTGTATTTAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGc                                                                                                                                  >  1:594184/1‑140 (MQ=255)

    aTACGAATCAGCTGGTTGTATTTAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGc                                                                                                                                  >  2:1059204/1‑140 (MQ=255)

     tACGAATCAGCTGGTTGTATTTAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCa                                                                                                                                 >  2:765238/1‑140 (MQ=255)

         aaTCAGCTGGTTGTATTTAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAgtgt                                                                                                                             <  1:1110555/140‑1 (MQ=255)

             aGCTGGTTGTATTTAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGcc                                                                                                                         >  2:688750/1‑140 (MQ=255)

               cTGGTTGTATTTAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAg                                                                                                                       <  1:1059204/140‑1 (MQ=255)

               cTGGTTGTATTTAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAg                                                                                                                       >  2:539619/1‑140 (MQ=255)

                  gTTGTATTTAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCAt                                                                                                                    >  2:166902/1‑140 (MQ=255)

                    tGTATTTAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCt                                                                                                                  >  2:112522/1‑140 (MQ=255)

                         ttAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGc                                                                                                             >  1:525233/1‑140 (MQ=255)

                         ttAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGc                                                                                                             >  2:201497/1‑140 (MQ=255)

                             cAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATc                                                                                                         >  1:1106985/1‑140 (MQ=255)

                                cacGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTg                                                                                                      >  1:297777/1‑140 (MQ=255)

                                cacGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTg                                                                                                      >  1:309599/1‑140 (MQ=255)

                                cacGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTg                                                                                                      >  1:350195/1‑140 (MQ=255)

                                cacGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTACGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCAACTTACGCCATCTTg                                                                                                      >  2:696550/1‑140 (MQ=255)

                                   ggTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGAtt                                                                                                   <  1:1054594/140‑1 (MQ=255)

                                     tCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGc                                                                                                 >  1:73100/1‑140 (MQ=255)

                                     tCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGc                                                                                                 >  1:1093575/1‑140 (MQ=255)

                                           cGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCag                                                                                           >  1:635013/1‑140 (MQ=255)

                                           cGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCag                                                                                           >  1:848555/1‑140 (MQ=255)

                                              cTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGt                                                                                        >  2:749439/1‑140 (MQ=255)

                                                 aTAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTc                                                                                     <  1:373515/140‑1 (MQ=255)

                                                      aCCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCa                                                                                >  1:835410/1‑140 (MQ=255)

                                                      aCCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCa                                                                                <  1:749439/140‑1 (MQ=255)

                                                        cAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCaga                                                                              <  2:525233/140‑1 (MQ=255)

                                                           ttttGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGaa                                                                           >  2:541439/1‑140 (MQ=255)

                                                               gATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGa                                                                       >  2:958246/1‑140 (MQ=255)

                                                               gATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGa                                                                       >  2:296149/1‑140 (MQ=255)

                                                                aTCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGAt                                                                      <  2:297777/140‑1 (MQ=255)

                                                                   tGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTg                                                                   >  2:507303/1‑140 (MQ=255)

                                                                          cagcagTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAAt                                                            >  2:559933/1‑140 (MQ=255)

                                                                           agcagTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAAtt                                                           <  1:201497/140‑1 (MQ=255)

                                                                               gTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGAt                                                       >  2:658729/1‑140 (MQ=255)

                                                                               gTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGAt                                                       <  1:965947/140‑1 (MQ=255)

                                                                               gTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGAt                                                       >  2:601785/1‑140 (MQ=255)

                                                                               gTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGAt                                                       <  1:903755/140‑1 (MQ=255)

                                                                               gTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGAt                                                       >  1:424430/1‑140 (MQ=255)

                                                                                    aaCAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGa                                                  <  2:1106985/140‑1 (MQ=255)

                                                                                    aaCAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGa                                                  <  2:309599/140‑1 (MQ=255)

                                                                                    aaCAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGa                                                  <  1:541439/140‑1 (MQ=255)

                                                                                     aCAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGAt                                                 >  2:844044/1‑140 (MQ=255)

                                                                                         ccAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAg                                             <  1:603058/140‑1 (MQ=255)

                                                                                          cAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGa                                                  <  1:595861/134‑1 (MQ=255)

                                                                                          cAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGa                                                  >  2:595861/1‑134 (MQ=255)

                                                                                          cAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGt                                            >  2:850806/1‑140 (MQ=255)

                                                                                          cAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGt                                            >  2:619702/1‑140 (MQ=255)

                                                                                            ggTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTa                                          >  1:1072777/1‑140 (MQ=255)

                                                                                            ggTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTa                                          >  2:294484/1‑140 (MQ=255)

                                                                                                 gCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGAt                                     >  1:577645/1‑140 (MQ=255)

                                                                                                       gTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCttt                               >  1:689784/1‑140 (MQ=255)

                                                                                                       gTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCttt                               >  1:235896/1‑140 (MQ=255)

                                                                                                           cGTCTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCg                           >  1:237233/1‑140 (MQ=255)

                                                                                                              cTTCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTGGCGATACCTTTTTCGATa                        <  1:559933/140‑1 (MQ=255)

                                                                                                               ttCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATAc                       >  2:441355/1‑140 (MQ=255)

                                                                                                               ttCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATAc                       >  1:1084430/1‑140 (MQ=255)

                                                                                                               ttCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATAc                       >  2:1025613/1‑140 (MQ=255)

                                                                                                                tCAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATAcc                      <  1:619702/140‑1 (MQ=255)

                                                                                                                 cAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACct                     <  1:958246/140‑1 (MQ=255)

                                                                                                                 cAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACct                     <  1:601785/140‑1 (MQ=255)

                                                                                                                 cAGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACct                     <  1:296149/140‑1 (MQ=255)

                                                                                                                  aGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACctt                    <  2:235896/140‑1 (MQ=255)

                                                                                                                  aGTTTCGCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACctt                    <  2:689784/140‑1 (MQ=255)

                                                                                                                        gCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACCTTCTTTCa              <  2:1072777/140‑1 (MQ=255)

                                                                                                                        gCCAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACCTTCTTTCa              <  2:1084430/140‑1 (MQ=255)

                                                                                                                         ccAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACCTTCTTTCAg             >  1:443790/1‑140 (MQ=255)

                                                                                                                         ccAGAACGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACCTTCTTTCAg             <  2:350195/140‑1 (MQ=255)

                                                                                                                             aaCGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACCTTCTTTCAGGATc         <  1:308828/140‑1 (MQ=255)

                                                                                                                              aCGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACCTTCTTTCAGGATCt        <  2:594184/140‑1 (MQ=255)

                                                                                                                              aCGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACCTTCTTTCAGGATCt        <  1:688750/140‑1 (MQ=255)

                                                                                                                              aCGGTGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACCTTCTTTCAGGATCt        >  1:48109/1‑140 (MQ=255)

                                                                                                                                  tGAGAGGTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACCTTCTTTCAGGATCTTGgt    >  2:14703/1‑140 (MQ=255)

                                                                                                                                    agaggTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACCTTCTTTCAGGATCTTGgtgt  <  1:372031/140‑1 (MQ=255)

                                                                                                                                    agaggTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACCTTCTTTCAGGATCTTGgtgt  <  1:441355/140‑1 (MQ=255)

                                                                                                                                    agaggTAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACCTTCTTTCAGGATCTTGgtgt  >  1:128753/1‑140 (MQ=255)

TTCGATACGAATCAGCTGGTTGTATTTAGCAACACGGTCAGAACGGCTCATAGAACCAGTTTTGATCTGGCCTGCAGCAGTACCAACAGCCAGGTCAGCGATGGTAGCGTCTTCAGTTTCGCCAGAACGGTGAGAGATAACTGCAGTGTAGCCAGCATCTTTCGCCATCTTGATTGCAGCCAGAGTTTCGGTCAGAGAACCGATCTGGTTGAATTTGATCAGGATGGAGTTAGCGATACCTTTTTCGATACCTTCTTTCAGGATCTTGGTGT  >  NC_000913/2906703‑2906974

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A