Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F28 I1 R1
|
180 |
66.5 |
2263572 |
99.4% |
2249990 |
138.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,428,923 |
Δ1 bp |
intergenic (‑161/‑313) |
rrsD ← / → yrdA |
16S ribosomal RNA/protein YrdA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,428,923 | 0 | C | . | 100.0%
| 99.5
/ NA
| 32 | intergenic (‑161/‑313) | rrsD/yrdA | 16S ribosomal RNA/protein YrdA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (17/15); total (17/15) |
TGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGG > NC_000913/3428870‑3429052
|
tGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCg > 2:902328/1‑140 (MQ=255)
gCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGa < 2:116576/140‑1 (MQ=255)
gCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGa < 2:143432/140‑1 (MQ=255)
cccACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAc > 2:582408/1‑140 (MQ=255)
ccACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc < 1:870318/140‑1 (MQ=255)
acacaGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTATGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCAt > 2:1124636/1‑140 (MQ=11)
acacaGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCAt < 1:608080/140‑1 (MQ=255)
tGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc < 2:473685/126‑1 (MQ=11)
tGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc > 1:473685/1‑126 (MQ=11)
tGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAgtgt > 2:408826/1‑140 (MQ=14)
tGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAgtgt > 2:724138/1‑140 (MQ=255)
tGATAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAgtgt < 1:60566/140‑1 (MQ=255)
aTAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTCTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGttt > 2:868304/1‑140 (MQ=14)
tAAATTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTc > 2:710130/1‑140 (MQ=17)
aaaTTGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCa > 1:814259/1‑140 (MQ=17)
tGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGtt > 2:134865/1‑140 (MQ=17)
tGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGtt > 2:489837/1‑140 (MQ=17)
tGTTAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGtt > 2:387897/1‑140 (MQ=255)
ttAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTgt > 2:710474/1‑140 (MQ=17)
ttAAAGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTgt < 2:360595/140‑1 (MQ=255)
aaGAGCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTgtcgt < 1:176958/140‑1 (MQ=255)
agCAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGtctc > 1:876928/1‑140 (MQ=18)
cAGTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCaa > 2:155076/1‑140 (MQ=18)
gTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTATGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACg < 1:1124636/140‑1 (MQ=18)
gTTGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACg > 1:1061054/1‑140 (MQ=18)
ttGCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACgg > 2:228792/1‑140 (MQ=18)
gCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAg < 1:155076/140‑1 (MQ=255)
gCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAg < 1:330337/140‑1 (MQ=255)
gCGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAg < 1:22805/140‑1 (MQ=255)
cGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAgg < 1:710474/140‑1 (MQ=255)
cGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAgg < 1:710130/140‑1 (MQ=255)
cGACGC‑GCTTT‑AGCGCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTCTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAgg < 1:868304/140‑1 (MQ=18)
|
TGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGG > NC_000913/3428870‑3429052
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
