Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,082,540 C→T A74T (GCC→ACC)  fdoH ← formate dehydrogenase O subunit beta

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,082,5400CT100.0% 266.9 / NA 77A74T (GCC→ACC) fdoHformate dehydrogenase O subunit beta
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (36/41);  total (36/41)

ATAATTGCACCTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGCGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGC  >  NC_000913/4082404‑4082669
                                                                                                                                        |                                                                                                                                 
ataatTGCACCTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCt                                                                                                                                <  2:944712/140‑1 (MQ=255)
  aatTGCACCTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTa                                                                                                                              <  1:190458/140‑1 (MQ=255)
   atTGCACCTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTaa                                                                                                                             <  1:656818/140‑1 (MQ=255)
    ttGCACCTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTaaa                                                                                                                            >  1:790722/1‑140 (MQ=255)
    ttGCACCTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTa                                                                                                                              <  1:157851/138‑1 (MQ=255)
    ttGCACCTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTa                                                                                                                              >  2:157851/1‑138 (MQ=255)
      gCACCTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATc                                                                                                                          >  1:543264/1‑140 (MQ=255)
      gCACCTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATc                                                                                                                          >  1:245546/1‑140 (MQ=255)
       cACCTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTGGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCa                                                                                                                         >  2:337181/1‑140 (MQ=255)
       cACCTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCa                                                                                                                         >  2:646263/1‑140 (MQ=255)
       cACCTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCa                                                                                                                         >  1:464843/1‑140 (MQ=255)
        aCCTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCAt                                                                                                                        <  2:245546/140‑1 (MQ=255)
         ccTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGgtgc                                                                                                                                 >  2:858540/1‑130 (MQ=255)
         ccTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCAtt                                                                                                                       >  2:1101438/1‑140 (MQ=255)
           ttCCGCCGGGCACGCTTTCAGGCAGCCTTGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTgg                                                                                                                     <  2:156619/140‑1 (MQ=255)
           ttCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTgg                                                                                                                     <  1:646263/140‑1 (MQ=255)
             ccgccgGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTgggg                                                                                                                   <  1:337181/140‑1 (MQ=255)
             ccgccgGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTgggg                                                                                                                   <  1:335137/140‑1 (MQ=255)
             ccgccgGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTgggg                                                                                                                   <  1:496750/140‑1 (MQ=255)
             ccgccgGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTgggg                                                                                                                   <  2:464843/140‑1 (MQ=255)
                     cACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTa                                                                                                           <  1:39861/140‑1 (MQ=255)
                     cACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTa                                                                                                           <  1:810074/140‑1 (MQ=255)
                     cACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTa                                                                                                           <  2:606750/140‑1 (MQ=255)
                             cAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCaa                                                                                                   <  2:841077/140‑1 (MQ=255)
                             cAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCaa                                                                                                   >  1:639793/1‑140 (MQ=255)
                                  aGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTa                                                                                              <  2:504832/140‑1 (MQ=255)
                                    ccTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTAtt                                                                                            >  1:634620/1‑140 (MQ=255)
                                      tGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGc                                                                                          <  1:571704/140‑1 (MQ=255)
                                        gATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCg                                                                                        <  2:362386/140‑1 (MQ=255)
                                              aaCAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTa                                                                                  >  1:1062068/1‑140 (MQ=255)
                                                  gTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATcgc                                                                              >  1:919159/1‑140 (MQ=255)
                                                   tGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGt                                                                                   >  2:386133/1‑134 (MQ=255)
                                                   tGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGt                                                                                   <  1:386133/134‑1 (MQ=255)
                                                   tGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATcgcg                                                                             >  2:234496/1‑140 (MQ=255)
                                                   tGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATcgcg                                                                             >  2:70373/1‑140 (MQ=255)
                                                     cATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGaa                                                                           <  1:1128528/140‑1 (MQ=255)
                                                       tACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCTACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATcgctattg                                                                         >  2:552115/1‑135 (MQ=255)
                                                        aCAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGt                                                                        >  1:942900/1‑140 (MQ=255)
                                                          aGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCg                                                                      >  2:228789/1‑140 (MQ=255)
                                                           gCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGt                                                                     >  2:439156/1‑140 (MQ=255)
                                                            ccGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGtt                                                                    >  2:734814/1‑140 (MQ=255)
                                                             cGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGtt                                                                    <  2:668232/139‑1 (MQ=255)
                                                             cGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGtt                                                                    >  1:668232/1‑139 (MQ=255)
                                                             cGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTc                                                                   >  1:889681/1‑140 (MQ=255)
                                                             cGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTc                                                                   >  1:403939/1‑140 (MQ=255)
                                                             cGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTc                                                                   <  1:644264/140‑1 (MQ=255)
                                                                 tttGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCAct                                                               <  2:634620/140‑1 (MQ=255)
                                                                    gCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCTGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATg                                                                         <  1:1013199/127‑1 (MQ=255)
                                                                    gCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCTGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCAGTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATg                                                                         >  2:1013199/1‑127 (MQ=255)
                                                                      ggATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGaa                                                          <  1:489223/140‑1 (MQ=255)
                                                                        aTCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAaca                                                        <  2:1062068/140‑1 (MQ=255)
                                                                        aTCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAaca                                                        <  1:70373/140‑1 (MQ=255)
                                                                          cAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACg                                                      >  2:738066/1‑140 (MQ=255)
                                                                                 tCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTg                                               <  2:919159/140‑1 (MQ=255)
                                                                                 tCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTg                                               <  2:1065562/140‑1 (MQ=255)
                                                                                 tCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTg                                               <  2:919468/140‑1 (MQ=255)
                                                                                 tCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTg                                               <  2:543264/140‑1 (MQ=255)
                                                                                      tttGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAgg                                          >  1:1098212/1‑140 (MQ=255)
                                                                                       ttGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGc                                         >  1:1111856/1‑140 (MQ=255)
                                                                                          tCGTTCTGCTCCACTTCCGAGACGCGCCTTCCCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCttt                                      <  2:790722/140‑1 (MQ=255)
                                                                                          tCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCttt                                      >  2:723568/1‑140 (MQ=255)
                                                                                          tCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCttt                                      <  2:942900/140‑1 (MQ=255)
                                                                                             ttCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACa                                   <  1:723568/140‑1 (MQ=255)
                                                                                               cTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGc                                 >  2:1129978/1‑140 (MQ=255)
                                                                                                tGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGCCGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTa                                     <  2:660200/135‑1 (MQ=255)
                                                                                                tGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTa                                     >  1:660200/1‑135 (MQ=255)
                                                                                                  cTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGa                              >  1:279131/1‑140 (MQ=255)
                                                                                                  cTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGa                              >  2:452754/1‑140 (MQ=255)
                                                                                                   tCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGAt                             <  1:552115/140‑1 (MQ=255)
                                                                                                     cACTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATAc                           <  2:403939/140‑1 (MQ=255)
                                                                                                       cTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACa                          >  1:863009/1‑139 (MQ=255)
                                                                                                       cTTCCGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACa                          <  2:863009/139‑1 (MQ=255)
                                                                                                          ccGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCtt                                       >  2:659632/1‑123 (MQ=255)
                                                                                                          ccGAGAAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCtt                                       <  1:659632/123‑1 (MQ=255)
                                                                                                            gagaAGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAggtggt                    >  2:629255/1‑140 (MQ=255)
                                                                                                                aGCGCATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACg                <  2:279131/140‑1 (MQ=255)
                                                                                                                    cATTACCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGa            <  1:228789/140‑1 (MQ=255)
                                                                                                                        aCCGTCCACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAg        >  2:673365/1‑140 (MQ=255)
                                                                                                                             ccACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACGCCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCg   <  1:439156/140‑1 (MQ=255)
                                                                                                                              cACGATTTGGTGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGc  >  1:857490/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                 
ATAATTGCACCTTCCGCCGGGCACGCTTTCAGGCAGCCTGGATCGGAACAGTGCATACAGCCGTCTTTGCGGATCAGCCATTCCAGTTTGTCGTTCTGCTCCACTTCCGAGAAGCGCATTACCGTCCACGATTTGGCGCTTAAATCATTGGGGTTGTCGTACACCCCAATGTTATTGCCGACGGTATCGCGAATGTCGTTCCACTCTGAACACGCCACCTGACAGGCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGC  >  NC_000913/4082404‑4082669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A