Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,486,942 A→G D242G (GAC→GGC)  lptF → lipopolysaccharide transport system protein LptF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,486,9420AG100.0% 280.4 / NA 79D242G (GAC→GGC) lptFlipopolysaccharide transport system protein LptF
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (37/42);  total (37/42)

CAGCTGCGCGACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGACCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATGGCACTTATGGTCGTACCGCTGAG  >  NC_000913/4486806‑4487077
                                                                                                                                        |                                                                                                                                       
cAGCTGCGCGACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGccc                                                                                                                                      >  2:987032/1‑140 (MQ=255)
  gCTGCGCGACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGa                                                                                                                                    >  2:707498/1‑140 (MQ=255)
      cgcgACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGa                                                                                                                                >  2:1125045/1‑140 (MQ=255)
      cgcgACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGa                                                                                                                                >  1:907518/1‑140 (MQ=255)
           cGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCg                                                                                                                           <  2:474960/140‑1 (MQ=255)
            ggCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGa                                                                                                                          <  1:439293/140‑1 (MQ=255)
                   aGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATg                                                                                                                   <  1:707498/140‑1 (MQ=255)
                     gtcgtcACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGa                                                                                                                 <  2:57177/140‑1 (MQ=255)
                     gtcgtcACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGa                                                                                                                 <  1:474938/140‑1 (MQ=255)
                         tcACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATg                                                                                                             >  2:1071597/1‑140 (MQ=255)
                           aCTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATgcg                                                                                                           <  2:176495/140‑1 (MQ=255)
                            ctctCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATgcgc                                                                                                          <  2:412014/140‑1 (MQ=255)
                             tctcAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGca                                                                                                         <  1:718803/140‑1 (MQ=255)
                               tcAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGcaca                                                                                                       <  2:397082/140‑1 (MQ=255)
                               tcAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGcaca                                                                                                       <  1:571468/140‑1 (MQ=255)
                                cAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACAt                                                                                                      <  2:325872/140‑1 (MQ=255)
                                     aGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTgg                                                                                                 <  2:544087/140‑1 (MQ=255)
                                     aGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTgg                                                                                                 <  1:1047576/140‑1 (MQ=255)
                                             cgcTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGa                                                                                         <  1:658321/140‑1 (MQ=255)
                                                  cGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCg                                                                                    >  1:639762/1‑140 (MQ=255)
                                                        cACTGCATTGTTACGCGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTg                                                                              >  1:516774/1‑140 (MQ=255)
                                                         aCTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGc                                                                             <  1:1112809/140‑1 (MQ=255)
                                                         aCTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGc                                                                             <  1:624846/140‑1 (MQ=255)
                                                              aTTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTcgcg                                                                        <  1:1125045/140‑1 (MQ=255)
                                                                  ttACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAga                                                                    >  2:260515/1‑140 (MQ=255)
                                                                  ttACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAga                                                                    >  2:891821/1‑140 (MQ=255)
                                                                  ttACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAga                                                                    >  2:92374/1‑140 (MQ=255)
                                                                   tACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAgaa                                                                   <  1:888074/140‑1 (MQ=255)
                                                                    aCGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAgaac                                                                  >  1:913851/1‑140 (MQ=255)
                                                                     cGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAgaact                                                                 >  2:182202/1‑140 (MQ=255)
                                                                     cGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAgaact                                                                 >  2:401705/1‑140 (MQ=255)
                                                                       tGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTcgcg                                                                        <  2:805010/131‑1 (MQ=255)
                                                                       tGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTcgcg                                                                        >  1:4606/1‑131 (MQ=255)
                                                                       tGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTcgcg                                                                        >  1:805010/1‑131 (MQ=255)
                                                                       tGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTcgcg                                                                        <  2:4606/131‑1 (MQ=255)
                                                                       tGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAgaactga                                                               >  1:870197/1‑140 (MQ=255)
                                                                         aTTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTcgcg                                                                        >  1:413606/1‑129 (MQ=255)
                                                                         aTTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTcgcg                                                                        <  2:413606/129‑1 (MQ=255)
                                                                            tCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTgg                                                          >  2:504481/1‑140 (MQ=255)
                                                                            tCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTgg                                                          >  2:222445/1‑140 (MQ=255)
                                                                            tCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTgg                                                          >  1:412608/1‑140 (MQ=255)
                                                                            tCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTgg                                                          >  1:683051/1‑140 (MQ=255)
                                                                            tCCGCATTACGGACTTCCAGGATTATCAGGCGATCATCGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTgg                                                          >  2:153610/1‑140 (MQ=255)
                                                                              cGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCg                                                        >  2:880729/1‑140 (MQ=255)
                                                                                cATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTa                                                      <  2:412608/140‑1 (MQ=255)
                                                                                   tACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCa                                                   <  2:256847/140‑1 (MQ=255)
                                                                                     cGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACg                                                 <  1:987032/140‑1 (MQ=255)
                                                                                     cGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACg                                                 <  1:891821/140‑1 (MQ=255)
                                                                                       gACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGtt                                               <  1:92374/140‑1 (MQ=255)
                                                                                                 aTTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCAcc                                     >  1:172236/1‑140 (MQ=255)
                                                                                                 aTTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCAcc                                     <  2:516774/140‑1 (MQ=255)
                                                                                                    aTCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTAtt                                         <  1:883778/133‑1 (MQ=255)
                                                                                                    aTCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTAtt                                         >  2:883778/1‑133 (MQ=255)
                                                                                                    aTCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCAcc                                     <  2:19702/137‑1 (MQ=255)
                                                                                                    aTCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCAcc                                     >  1:19702/1‑137 (MQ=255)
                                                                                                    aTCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCgtg                                  >  2:613497/1‑140 (MQ=255)
                                                                                                    aTCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCgtg                                  >  1:904140/1‑140 (MQ=255)
                                                                                                    aTCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCgtg                                  >  2:750057/1‑140 (MQ=255)
                                                                                                     tCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCa                                       <  1:612744/134‑1 (MQ=255)
                                                                                                     tCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCa                                       >  2:612744/1‑134 (MQ=255)
                                                                                                      cAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGtt                                <  1:182202/140‑1 (MQ=255)
                                                                                                         gCGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTat                             >  1:829504/1‑140 (MQ=255)
                                                                                                          cGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTa                              >  2:696658/1‑138 (MQ=255)
                                                                                                          cGATCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTa                              <  1:696658/138‑1 (MQ=255)
                                                                                                            aTCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTatgat                          >  1:935618/1‑140 (MQ=255)
                                                                                                             tCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTatgatg                         <  2:870197/140‑1 (MQ=255)
                                                                                                             tCATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTatgatg                         <  1:401705/140‑1 (MQ=255)
                                                                                                              cATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATgg                        <  1:750057/140‑1 (MQ=255)
                                                                                                              cATTGGTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATgg                        <  1:613497/140‑1 (MQ=255)
                                                                                                                  ggTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATGGCACt                    <  2:913851/140‑1 (MQ=255)
                                                                                                                   gTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATGGCACtt                   >  1:375647/1‑140 (MQ=255)
                                                                                                                   gTCACCAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATGGCACtt                   >  1:1103236/1‑140 (MQ=255)
                                                                                                                       ccAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATGGCACTTATgg               >  2:586589/1‑140 (MQ=255)
                                                                                                                       ccAGGCGGTGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATGGCACTTATgg               <  2:904140/140‑1 (MQ=255)
                                                                                                                               tGGCGCTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATGGCACTTATGGTCGTACCg       <  1:222445/140‑1 (MQ=255)
                                                                                                                                  cgcTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATGGCACTTATGGTCGTACCGCTg    >  1:354914/1‑140 (MQ=255)
                                                                                                                                    cTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATGGCACTTATGGTCGTACCGCTGAg  <  2:375647/140‑1 (MQ=255)
                                                                                                                                    cTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATGGCACTTATGGTCGTACCGCTGAg  <  2:1103236/140‑1 (MQ=255)
                                                                                                                                    cTCGGCCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATGGCACTTATGGTCGTACCGCTGAg  <  1:586589/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
CAGCTGCGCGACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCATTGGTCACCAGGCGGTGGCGCTCGACCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACACTGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATGGCACTTATGGTCGTACCGCTGAG  >  NC_000913/4486806‑4487077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A