Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,421,237	C→T	A40V (GCA→GTA)	ydaU →	Rac prophage; DUF1376 domain‑containing protein YdaU

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,421,237	0	C	T	100.0%	259.3 / NA	73	A40V (GCA→GTA)	ydaU	Rac prophage; DUF1376 domain‑containing protein YdaU
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (49/24); total (49/24)

CATTAAGCAAAAGTTTCCATGCTGTTTGTGCTTATTCTAAGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGCAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCATCCTTGC  >  NC_000913/1421101‑1421368

cATTAAGCAAAAGTTTCCATGCTGTTTGTGCTTATTCTAAGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTaga                                                                                                                                  >  1:620234/1‑140 (MQ=255)

  ttAAGCAAAAGTTTCCATGCTGTTTGTGCTTATTCTAAGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAgagg                                                                                                                                >  2:816628/1‑140 (MQ=255)

  ttAAGCAAAAGTTTCCATGCTGTTTGTGCTTATTCTAAGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAgagg                                                                                                                                >  1:131049/1‑140 (MQ=255)

     aGCAAAAGTTTCCATGCTGTTTGTGCTTATTCTAAGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGc                                                                                                                             >  1:190332/1‑140 (MQ=255)

      gCAAAAGTTTCCATGCTGTTTGTGCTTATTCTAAGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCa                                                                                                                            <  2:620234/140‑1 (MQ=255)

      gCAAAAGTTTCCATGCTGTTTGTGCTTATTCTAAGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCa                                                                                                                            <  1:816628/140‑1 (MQ=255)

        aaaaGTTTCCATGCTGTTTGTGCTTATTCTAAGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATg                                                                                                                          <  1:1124751/140‑1 (MQ=255)

        aaaaGTTTCCATGCTGTTTGTGCTTATTCTAAGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATg                                                                                                                          <  1:378018/140‑1 (MQ=255)

        aaaaGTTTCCATGCTGTTTGTGCTTATTCTAAGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATg                                                                                                                          <  1:284460/140‑1 (MQ=255)

           aGTTTCCATGCTGTTTGTGCTTATTCTAAGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTg                                                                                                                       <  1:1211607/140‑1 (MQ=255)

                 cATGCTGTTTGTGCTTATTCTAAGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTAtt                                                                                                                 >  1:849303/1‑140 (MQ=255)

                         ttGTGCTTATTCTAAGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTg                                                                                                         <  1:989091/140‑1 (MQ=255)

                                       aGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTg                                                                                           >  2:1091743/1‑140 (MQ=255)

                                           aCCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCaa                                                                                       <  2:302743/140‑1 (MQ=255)

                                           aCCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCaa                                                                                       <  2:131049/140‑1 (MQ=255)

                                           aCCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAG‑GGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCaaa                                                                                      >  2:669914/1‑140 (MQ=255)

                                            ccGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCaaa                                                                                      >  1:197485/1‑140 (MQ=255)

                                            ccGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCaaa                                                                                      >  1:713446/1‑140 (MQ=255)

                                             cGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCaa                                                                                       <  2:407799/138‑1 (MQ=255)

                                             cGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCaa                                                                                       >  1:407799/1‑138 (MQ=255)

                                             cGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAAc                                                                                     >  2:649188/1‑140 (MQ=255)

                                                       catACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCa                                                                           <  1:466263/140‑1 (MQ=255)

                                                          aCGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATa                                                                        >  2:453341/1‑140 (MQ=255)

                                                              ggCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTa                                                                    >  2:882412/1‑140 (MQ=255)

                                                              ggCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTa                                                                    >  1:129700/1‑140 (MQ=255)

                                                              ggCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTa                                                                    >  1:345119/1‑140 (MQ=255)

                                                                cAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTaaa                                                                  >  1:285614/1‑140 (MQ=255)

                                                                 aaTTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTaaaa                                                                 >  1:53957/1‑140 (MQ=255)

                                                                   ttATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAAc                                                               >  1:1195529/1‑140 (MQ=255)

                                                                        gCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCt                                                          >  2:478223/1‑140 (MQ=255)

                                                                          cGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTgg                                                        <  2:197485/140‑1 (MQ=255)

                                                                                    tACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGc                                              >  2:182807/1‑140 (MQ=255)

                                                                                    tACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAG‑GGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGcc                                             <  1:669914/140‑1 (MQ=255)

                                                                                     aCATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGcc                                             <  2:1195529/140‑1 (MQ=255)

                                                                                       aTGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAgg                                                            >  1:513962/1‑123 (MQ=255)

                                                                                       aTGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAgg                                                            <  2:513962/123‑1 (MQ=255)

                                                                                       aTGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCg                                           >  2:487825/1‑140 (MQ=255)

                                                                                         gCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTc                                         >  1:973792/1‑140 (MQ=255)

                                                                                         gCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTc                                         >  2:413338/1‑140 (MQ=255)

                                                                                         gCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTc                                         >  1:1205068/1‑140 (MQ=255)

                                                                                             cTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGAc                                     >  1:267694/1‑140 (MQ=255)

                                                                                               gTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTa                                   >  2:477190/1‑140 (MQ=255)

                                                                                               gTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTa                                   >  2:561348/1‑140 (MQ=255)

                                                                                                tACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTaa                                  >  2:859748/1‑140 (MQ=255)

                                                                                                tACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTaa                                  >  2:715558/1‑140 (MQ=255)

                                                                                                     aGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGa                                      <  1:883410/131‑1 (MQ=255)

                                                                                                     aGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGa                                      >  2:883410/1‑131 (MQ=255)

                                                                                                     aGCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGc                             >  2:222229/1‑140 (MQ=255)

                                                                                                      gCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCg                            <  1:882412/140‑1 (MQ=255)

                                                                                                      gCTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCg                            <  2:378942/140‑1 (MQ=255)

                                                                                                       cTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGa                           >  2:130237/1‑140 (MQ=255)

                                                                                                       cTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGa                           <  2:129700/140‑1 (MQ=255)

                                                                                                       cTGATTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGa                           >  2:1222385/1‑140 (MQ=255)

                                                                                                          aTTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATgg                        >  1:551623/1‑140 (MQ=255)

                                                                                                          aTTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATgg                        >  1:447016/1‑140 (MQ=255)

                                                                                                          aTTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATgg                        >  2:186847/1‑140 (MQ=255)

                                                                                                          aTTACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATgg                        >  1:367350/1‑140 (MQ=255)

                                                                                                            tACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGc                      <  1:186847/140‑1 (MQ=255)

                                                                                                            tACCTGGCTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGc                      <  1:487825/140‑1 (MQ=255)

                                                                                                                   cTGACACCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGtt               <  1:578085/140‑1 (MQ=255)

                                                                                                                        acCATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAAcc          >  1:371675/1‑140 (MQ=255)

                                                                                                                         ccATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCa         >  2:441581/1‑140 (MQ=255)

                                                                                                                          cATGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCAt        <  2:973792/140‑1 (MQ=255)

                                                                                                                            tGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAATAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCATcc      >  2:93690/1‑140 (MQ=255)

                                                                                                                            tGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCATcc      >  2:663588/1‑140 (MQ=255)

                                                                                                                            tGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCATcc      >  2:746553/1‑140 (MQ=255)

                                                                                                                            tGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCATcc      >  2:20944/1‑140 (MQ=255)

                                                                                                                            tGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCATcc      >  2:832628/1‑140 (MQ=255)

                                                                                                                            tGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCATcc      >  1:768154/1‑140 (MQ=255)

                                                                                                                            tGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCATcc      >  1:225984/1‑140 (MQ=255)

                                                                                                                            tGCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTCCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCATcc      >  1:598114/1‑140 (MQ=255)

                                                                                                                             gCATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCATCCt     >  1:11891/1‑140 (MQ=255)

                                                                                                                              cATTTGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCATCCtt    >  2:434253/1‑140 (MQ=255)

                                                                                                                                tttGTCAGTAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCATCCTTGc  <  2:285614/140‑1 (MQ=255)

CATTAAGCAAAAGTTTCCATGCTGTTTGTGCTTATTCTAAGCCACCGGGCAGCATCATACGGGGCAATTATGGCCGCATTACCATACATGCAACTGTACATAGCTGATTACCTGGCTGACACCATGCATTTGTCAGCAGAGGAGCATGGTGCGTATTTGTTGCTGATGTTCAATTACTGGCAAACAGGAAAGCCAATACCTAAAAACAGGCTGGCAAAAATTGCCCGTCTGACTAACGAGCGATGGGCTGATGTTGAACCATCCTTGC  >  NC_000913/1421101‑1421368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A