Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,485,893	C→T	R945C (CGC→TGC)	hrpA →	ATP‑dependent RNA helicase HrpA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,485,893	0	C	T	100.0%	272.4 / NA	80	R945C (CGC→TGC)	hrpA	ATP‑dependent RNA helicase HrpA
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (36/44); total (36/44)

GCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAGGGCGCTCGCTACA  >  NC_000913/1485759‑1486029

gcgAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAg                                                                                                                                     >  2:54965/1‑140 (MQ=255)

    aCTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTAc                                                                                                                                 <  1:303014/140‑1 (MQ=255)

      tGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTAcgg                                                                                                                               <  1:1225140/140‑1 (MQ=255)

              gCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGAc                                                                                                                       <  2:182432/140‑1 (MQ=255)

              gCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGAc                                                                                                                       <  2:41296/140‑1 (MQ=255)

              gCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGAc                                                                                                                       <  1:654988/140‑1 (MQ=255)

                tctGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCg                                                                                                                     >  1:1084876/1‑140 (MQ=255)

                 ctGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCgg                                                                                                                    <  2:584951/140‑1 (MQ=255)

                    aTTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGt                                                                                                                 >  2:892790/1‑140 (MQ=255)

                     ttAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGtt                                                                                                                >  2:675588/1‑140 (MQ=255)

                         aTCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCg                                                                                                            >  1:551524/1‑140 (MQ=255)

                         aTCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCg                                                                                                            >  1:771401/1‑140 (MQ=255)

                          tCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGt                                                                                                           <  1:745012/140‑1 (MQ=255)

                            gTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTg                                                                                                         >  1:771774/1‑140 (MQ=255)

                              tGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGAc                                                                                                       >  2:909117/1‑140 (MQ=255)

                              tGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGAc                                                                                                       >  2:678197/1‑140 (MQ=255)

                                  gAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACcgcg                                                                                                   <  2:153019/140‑1 (MQ=255)

                                  gAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACcgcg                                                                                                   <  2:399448/140‑1 (MQ=255)

                                       cGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGAc                                                                                              <  2:915233/140‑1 (MQ=255)

                                       cGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGAc                                                                                              <  2:56635/140‑1 (MQ=255)

                                        ggTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACt                                                                                             <  2:64135/140‑1 (MQ=255)

                                        ggTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACt                                                                                             <  2:771401/140‑1 (MQ=255)

                                          tACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTgg                                                                                           >  1:376181/1‑140 (MQ=255)

                                            cGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCa                                                                                         <  1:54965/140‑1 (MQ=255)

                                             gCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCAc                                                                                        <  2:42366/140‑1 (MQ=255)

                                              ccGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACt                                                                                       >  1:325549/1‑140 (MQ=255)

                                                 tAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTggg                                                                                    >  2:23434/1‑140 (MQ=255)

                                                   aTTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGAt                                                                                  >  1:227885/1‑140 (MQ=255)

                                                    ttttGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATc                                                                                 <  1:1009954/140‑1 (MQ=255)

                                                    ttttGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATc                                                                                 <  2:325549/140‑1 (MQ=255)

                                                    ttttGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATc                                                                                 <  2:376181/140‑1 (MQ=255)

                                                     tttGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCa                                                                                <  1:985991/140‑1 (MQ=255)

                                                              gcgcCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCa                                                                                >  2:735792/1‑131 (MQ=255)

                                                              gcgcCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCa                                                                                <  1:735792/131‑1 (MQ=255)

                                                              gcgcCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCg                                                                        <  2:545031/139‑1 (MQ=255)

                                                              gcgcCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCg                                                                        >  1:545031/1‑139 (MQ=255)

                                                              gcgcCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGa                                                                       <  1:892790/140‑1 (MQ=255)

                                                               cgcCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGAt                                                                      >  1:338656/1‑140 (MQ=255)

                                                               cgcCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGAt                                                                      >  1:635624/1‑140 (MQ=255)

                                                                gcCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATc                                                                     <  1:1250599/140‑1 (MQ=255)

                                                                  cacaCTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCAc                                                                   <  2:1084876/137‑1 (MQ=255)

                                                                    aaCTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCt                                                                 <  2:981245/140‑1 (MQ=255)

                                                                         tGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGaaaa                                                            >  2:43369/1‑140 (MQ=255)

                                                                         tGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGaaaa                                                            >  2:8470/1‑140 (MQ=255)

                                                                          gCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAAt                                                           <  2:338656/140‑1 (MQ=255)

                                                                           ccGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAAtt                                                          >  2:299030/1‑140 (MQ=255)

                                                                              aaGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTAcc                                                       >  1:195406/1‑140 (MQ=255)

                                                                                     tttAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCcgcg                                                <  2:925044/140‑1 (MQ=255)

                                                                                     tttAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCcgcg                                                <  1:23434/140‑1 (MQ=255)

                                                                                           ccGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCcgcg                                                >  1:118823/1‑134 (MQ=255)

                                                                                           ccGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCcgcg                                                <  2:118823/134‑1 (MQ=255)

                                                                                              cgTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGGTCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATg                                       >  2:523829/1‑140 (MQ=255)

                                                                                              cgTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCcgcg                                                <  2:173483/131‑1 (MQ=255)

                                                                                              cgTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCcgcg                                                >  1:173483/1‑131 (MQ=255)

                                                                                              cgTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATg                                       >  1:481151/1‑140 (MQ=255)

                                                                                              cgTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATg                                       >  2:437007/1‑140 (MQ=255)

                                                                                              cgTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATg                                       >  1:562644/1‑140 (MQ=255)

                                                                                              cgTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGGGGATg                                       >  1:669667/1‑140 (MQ=255)

                                                                                                   aaCCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACaaa                                  <  1:909117/140‑1 (MQ=255)

                                                                                                        cTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACaa                             <  1:8470/140‑1 (MQ=255)

                                                                                                        cTGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACaa                             <  2:481151/140‑1 (MQ=255)

                                                                                                         tGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGAt                                        <  1:583501/128‑1 (MQ=255)

                                                                                                         tGGAGTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGAt                                        >  2:583501/1‑128 (MQ=255)

                                                                                                             gTTACCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGc                        <  1:299030/140‑1 (MQ=255)

                                                                                                                aCCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTaa                     >  1:1145954/1‑140 (MQ=255)

                                                                                                                aCCGTTGCTCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTaa                     >  2:1249682/1‑140 (MQ=255)

                                                                                                                        tCGACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAggg             <  1:437007/140‑1 (MQ=255)

                                                                                                                          gACAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAGGgcg           >  2:717474/1‑140 (MQ=255)

                                                                                                                            cAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAGGGcgct         <  2:1217448/140‑1 (MQ=255)

                                                                                                                            cAGCCTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAGGGcgct         <  2:245299/140‑1 (MQ=255)

                                                                                                                               ccTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAGGGcgctcgc      >  1:1127387/1‑140 (MQ=255)

                                                                                                                               ccTTGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAGGGcgctcgc      >  1:266598/1‑140 (MQ=255)

                                                                                                                                 ttGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGGAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGGGGATGACAAAAACAAGGAGCTAAAAGAAGGGcgctcgctc    >  2:1184339/1‑139 (MQ=255)

                                                                                                                                 ttGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAGGGCGCTCGCTa    <  2:195406/140‑1 (MQ=255)

                                                                                                                                 ttGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAGGGCGCTCGCTa    >  2:720792/1‑140 (MQ=255)

                                                                                                                                  tGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAGGGCGCTCGCTAc   <  2:771774/140‑1 (MQ=255)

                                                                                                                                  tGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAGGGCGCTCGCTAc   <  2:227885/140‑1 (MQ=255)

                                                                                                                                  tGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAGGGCGCTCGCTAc   <  2:1127387/140‑1 (MQ=255)

                                                                                                                                  tGAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAGGGCGCTCGCTAc   <  2:961536/140‑1 (MQ=255)

                                                                                                                                   gAGTGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAGGGCGCTCGCTACa  <  1:720792/140‑1 (MQ=255)

GCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGATCAGGTGCCCGATCACCTGAAAATTACCTTCCGCGTGGTGGATGACAAAAACAAGAAGCTAAAAGAAGGGCGCTCGCTACA  >  NC_000913/1485759‑1486029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A