Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,684,919	G→A	A221T (GCC→ACC)	tus →	DNA replication terminus site‑binding protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,684,919	0	G	A	98.6%	220.3 / NA	69	A221T (GCC→ACC)	tus	DNA replication terminus site‑binding protein
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (37/31); minor base C (0/1); total (37/32)
Fisher's exact test for biased strand distribution p-value = 4.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AACATATCATTAAGAATTTACATCGTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTGCCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTACACCACTGATTGCACTGATTAATCGG  >  NC_000913/1684782‑1685053

aaCATATCATTAAGAATTTACATCGTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGctacc                                                                                                                                      <  1:1182465/140‑1 (MQ=255)

  cATATCATTAAGAATTTACATCGTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGctaccct                                                                                                                                    >  1:538078/1‑140 (MQ=255)

    tatCATTAAGAATTTACATCGTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGctaccctgc                                                                                                                                  <  2:1097996/140‑1 (MQ=255)

     atCATTAAGAATTTACATCGTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGctacc                                                                                                                                      >  2:148723/1‑135 (MQ=255)

     atCATTAAGAATTTACATCGTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGctacc                                                                                                                                      <  1:148723/135‑1 (MQ=255)

     atCATTAAGAATTTACATCGTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCACACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGctaccctgcc                                                                                                                                 >  1:1130558/1‑140 (MQ=255)

       cATTAAGAATTTACATCGTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCcac                                                                                                                               >  2:26365/1‑140 (MQ=255)

       cATTAAGAATTTACATCGTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCcac                                                                                                                               >  2:3456/1‑140 (MQ=255)

         ttAAGAATTTACATCGTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAg                                                                                                                             >  2:581726/1‑140 (MQ=255)

             gAATTTACATCGTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAAcg                                                                                                                         <  1:1091850/140‑1 (MQ=255)

                tttACATCGTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGa                                                                                                                      <  2:1076176/140‑1 (MQ=255)

                tttACATCGTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCACACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGa                                                                                                                      <  2:1130558/140‑1 (MQ=255)

                        gTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTaaaa                                                                                                              >  2:16554/1‑140 (MQ=255)

                        gTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTaaaa                                                                                                              >  1:304659/1‑140 (MQ=255)

                         tgatgaAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTaaaaa                                                                                                             >  2:1156848/1‑140 (MQ=255)

                          gatgaAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAAt                                                                                                            >  2:240319/1‑140 (MQ=255)

                           atgaAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGtt                                                                                                                  <  2:426995/133‑1 (MQ=255)

                           atgaAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGtt                                                                                                                  >  1:426995/1‑133 (MQ=255)

                              aaGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCaaa                                                                                                        <  1:240319/140‑1 (MQ=255)

                                 tCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGt                                                                                                     >  2:915809/1‑140 (MQ=255)

                                           gCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTcc                                                                                                   >  1:64499/1‑132 (MQ=255)

                                           gCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTcc                                                                                                   <  2:64499/132‑1 (MQ=255)

                                           gCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAgg                                                                                           >  2:684603/1‑140 (MQ=255)

                                           gCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAgg                                                                                           >  2:70443/1‑140 (MQ=255)

                                            cTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGt                                                                                          >  1:322018/1‑140 (MQ=255)

                                                       ccTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGt                                                                                                >  1:570956/1‑123 (MQ=255)

                                                       ccTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGt                                                                                                <  2:570956/123‑1 (MQ=255)

                                                          gAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGccc                                                                            <  2:322018/140‑1 (MQ=255)

                                                          gAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGccc                                                                            >  1:1065357/1‑140 (MQ=255)

                                                               caccacGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAATGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTc                                                                       <  1:1088481/140‑1 (MQ=255)

                                                               caccacGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTc                                                                       <  1:762364/140‑1 (MQ=255)

                                                               caccacGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTc                                                                       <  1:16554/140‑1 (MQ=255)

                                                               caccacGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTc                                                                       <  2:304659/140‑1 (MQ=255)

                                                               caccacGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTc                                                                       <  1:915809/140‑1 (MQ=255)

                                                               caccacGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTc                                                                       <  2:1012559/140‑1 (MQ=255)

                                                                      cAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACa                                                                <  2:1065357/140‑1 (MQ=255)

                                                                       aGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACaa                                                               >  2:702181/1‑140 (MQ=255)

                                                                         tgtCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAg                                                             <  2:136592/140‑1 (MQ=255)

                                                                          gtCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAgg                                                            <  1:684603/140‑1 (MQ=255)

                                                                              cACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGAt                                                        >  2:819044/1‑140 (MQ=255)

                                                                                ccGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCa                                                      >  1:777950/1‑140 (MQ=255)

                                                                                   tGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCaaaa                                                   >  1:724243/1‑140 (MQ=255)

                                                                                   tGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCaaaa                                                   >  2:912/1‑140 (MQ=255)

                                                                                   tGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCaaaa                                                   >  2:871637/1‑140 (MQ=255)

                                                                                   tGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCaaaa                                                   >  1:1076457/1‑140 (MQ=255)

                                                                                   tGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCaaaa                                                   >  2:951619/1‑140 (MQ=255)

                                                                                   tGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCa                                                      <  1:139813/137‑1 (MQ=255)

                                                                                   tGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCa                                                      >  2:139813/1‑137 (MQ=255)

                                                                                   tGGACGCACGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTa                                                                  <  2:1078838/125‑1 (MQ=255)

                                                                                   tGGACGCACGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTa                                                                  >  1:1078838/1‑125 (MQ=255)

                                                                                     gACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAAc                                                 >  1:402653/1‑140 (MQ=255)

                                                                                         cgcgAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGt                                             >  1:729191/1‑140 (MQ=255)

                                                                                         cgcgAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGt                                             >  1:111633/1‑140 (MQ=255)

                                                                                           cgAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTcc                                           >  2:466211/1‑140 (MQ=255)

                                                                                             aggagTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCaa                                         <  2:777950/140‑1 (MQ=255)

                                                                                             aggagTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCaa                                         <  2:402653/140‑1 (MQ=255)

                                                                                                  tGGCAAAGAAAACTGGAGCGGGAGTATCAGGATATCGCTCCCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGc                                    <  2:625982/140‑1 (MQ=255)

                                                                                                  tGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGc                                    <  2:564082/140‑1 (MQ=255)

                                                                                                  tGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGc                                    <  1:1004155/140‑1 (MQ=255)

                                                                                                  tGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGc                                    <  1:727437/140‑1 (MQ=255)

                                                                                                  gggCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGc                                    <  2:128923/139‑1 (MQ=255)

                                                                                                        aGAAAACTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGccc                              >  2:152626/1‑140 (MQ=255)

                                                                                                          aaaaCTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTa                            >  1:212882/1‑140 (MQ=255)

                                                                                                          aaaaCTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTa                            <  1:46937/140‑1 (MQ=255)

                                                                                                          aaaaCTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTa                            <  1:581726/140‑1 (MQ=255)

                                                                                                            aaCTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTaca                          <  1:26365/140‑1 (MQ=255)

                                                                                                              cTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTAcacc                        <  2:668764/140‑1 (MQ=255)

                                                                                                              cTGGAGCGAGAGTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTAcacc                        <  2:724243/140‑1 (MQ=255)

                                                                                                                       gagTATCAGGATATCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTACACCACTGATTGc               <  2:666616/140‑1 (MQ=255)

                                                                                                                                 atatCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTACACCACTGATTGCACTGATTAAt     >  2:721452/1‑140 (MQ=255)

                                                                                                                                 atatCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTACACCACTGATTGCACTGATTAAt     <  1:702181/140‑1 (MQ=255)

                                                                                                                                  tatCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTACACCACTGATTGCACTGATTAATc    >  1:608483/1‑140 (MQ=255)

                                                                                                                                    tCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTACACCACTGATTGCACTGATTAATCgg  >  2:254339/1‑140 (MQ=255)

                                                                                                                                    tCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTACACCACTGATTGCACTGATTAATCgg  >  2:183472/1‑140 (MQ=255)

                                                                                                                                    tCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTACACCACTGATTGCACTGATTAATCgg  >  2:1029744/1‑140 (MQ=255)

                                                                                                                                    tCGCTACCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCCGCCCTACACCACTGATTGCACTGATTAATCgg  >  2:1175621/1‑140 (MQ=255)

AACATATCATTAAGAATTTACATCGTGATGAAGTCCTGGCACAGCTGGAAAAAAGCCTGAAATCACCACGCAGTGTCGCACCGTGGACGCGCGAGGAGTGGCAAAGAAAACTGGAGCGAGAGTATCAGGATATCGCTGCCCTGCCACAGAACGCGAAGTTAAAAATCAAACGTCCGGTGAAGGTGCAGCCGATTGCCCGCGTCTGGTACAAAGGAGATCAAAAACAAGTCCAACACGCCTGCCCTACACCACTGATTGCACTGATTAATCGG  >  NC_000913/1684782‑1685053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A