Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,695,818	A→G	V85A (GTG→GCG)	uidA ←	beta‑glucuronidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,695,818	0	A	G	100.0%	286.2 / NA	80	V85A (GTG→GCG)	uidA	beta‑glucuronidase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (42/38); total (42/38)

ACGTACACTTTTCCCGGCAATAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCACGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTAAAACTGCCTGGCACAGCAATTGCCCGG  >  NC_000913/1695685‑1695946

aCGTACAC‑TTTCCCGGCAATAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACg                                                                                                                           <  1:646474/140‑1 (MQ=255)

    acacTTTTCCCGGCAATAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTg                                                                                                                        >  1:1006296/1‑140 (MQ=255)

    acacTTTTCCCGGCAATAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTg                                                                                                                        >  2:456146/1‑140 (MQ=255)

    acacTTTTCCCGGCAATAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCAACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTg                                                                                                                        >  1:249232/1‑140 (MQ=255)

      ccTTTTCCCGGCAATAACATACGGCGTGACATCGGCTTCAAAAGGCGTATAGCCGCCCTGATGCTCCATCCCTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGc                                                                                                                      <  2:765076/139‑1 (MQ=255)

        ttttCCCGGCAATAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCt                                                                                                                    >  2:1012908/1‑140 (MQ=255)

         tttCCCGGCAATAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTg                                                                                                                   <  2:1031178/140‑1 (MQ=255)

          ttCCCGGCAATAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGc                                                                                                                  >  2:674696/1‑140 (MQ=255)

          ttCCCGGCAATAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGc                                                                                                                  >  1:793069/1‑140 (MQ=255)

          ttCCCGGCAATAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGc                                                                                                                  >  2:85016/1‑140 (MQ=255)

              cGGCAATAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCaa                                                                                                              <  2:463075/140‑1 (MQ=255)

                   aTAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCttt                                                                                                         <  1:85016/140‑1 (MQ=255)

                   aTAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCttt                                                                                                         <  1:165099/140‑1 (MQ=255)

                    tAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTc                                                                                                        <  1:674696/140‑1 (MQ=255)

                     aaCATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCg                                                                                                       <  2:793069/140‑1 (MQ=255)

                      aCATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCgg                                                                                                      <  2:1006296/140‑1 (MQ=255)

                           cGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTg                                                                                                                   <  2:605797/122‑1 (MQ=255)

                           cGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTg                                                                                                                   >  1:605797/1‑122 (MQ=255)

                           cGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATaa                                                                                                 >  1:737102/1‑140 (MQ=255)

                              cGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGa                                                                                              >  2:460987/1‑140 (MQ=255)

                              cGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGa                                                                                              >  1:917824/1‑140 (MQ=255)

                              cGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGa                                                                                              >  2:733145/1‑140 (MQ=255)

                              cGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGa                                                                                              >  1:411061/1‑140 (MQ=255)

                              cGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGa                                                                                              >  2:1208594/1‑140 (MQ=255)

                              cGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGa                                                                                              >  2:308225/1‑140 (MQ=255)

                                tGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACt                                                                                            >  2:236236/1‑140 (MQ=255)

                                  aCATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTGATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTc                                                                                          >  2:1090000/1‑140 (MQ=255)

                                   cATCGGCTTCAAATGGCGTATAGCCG‑CCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTc                                                                                          >  2:902538/1‑138 (MQ=255)

                                   cATCGGCTTCAAATGGCGTATAGCCG‑CCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTc                                                                                          <  1:902538/138‑1 (MQ=255)

                                     tCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTcgcg                                                                                       <  1:236236/140‑1 (MQ=255)

                                      cGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCgcgc                                                                                      <  1:183985/140‑1 (MQ=255)

                                            cAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATAc                                                                                <  2:917824/140‑1 (MQ=255)

                                                 ggCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGAc                                                                           >  2:910604/1‑140 (MQ=255)

                                                      ataGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGc                                                                      <  1:308225/140‑1 (MQ=255)

                                                        aGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGccc                                                                    <  1:460987/140‑1 (MQ=255)

                                                           cgccCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCa                                                                 <  2:132757/140‑1 (MQ=255)

                                                             cccTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATa                                                               >  1:855429/1‑140 (MQ=255)

                                                             cccTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCACATa                                                               >  2:950063/1‑140 (MQ=255)

                                                                  aTGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTAc                                                          >  2:760261/1‑140 (MQ=255)

                                                                  aTGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTAc                                                          >  2:1146561/1‑140 (MQ=255)

                                                                   tGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACg                                                         <  1:910604/140‑1 (MQ=255)

                                                                   tGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACg                                                         <  2:411061/140‑1 (MQ=255)

                                                                      tCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAat                                                      <  1:760261/140‑1 (MQ=255)

                                                                        cATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAatat                                                    >  1:535925/1‑140 (MQ=255)

                                                                           cACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTg                                                 <  2:978439/140‑1 (MQ=255)

                                                                           cACTTCCTGATTATTGACCAACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTg                                                 <  2:249232/140‑1 (MQ=255)

                                                                                ccTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCg                                            >  2:965037/1‑140 (MQ=255)

                                                                                ccTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCg                                            <  1:456146/140‑1 (MQ=255)

                                                                                 cTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCgg                                           <  2:737102/140‑1 (MQ=255)

                                                                                  tGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGc                                          >  2:1171468/1‑140 (MQ=255)

                                                                                   gATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCg                                         <  2:771054/140‑1 (MQ=255)

                                                                                   gATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCg                                         <  1:654540/140‑1 (MQ=255)

                                                                                    attattGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGa                                        >  2:290871/1‑140 (MQ=255)

                                                                                     ttattGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGaa                                       <  2:733346/140‑1 (MQ=255)

                                                                                      tattGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATACAGACTTCGCGCTGATACCAGACGATGCCCGCATAATTACGAATATCTGCATCGGCGAAc                                      >  2:387176/1‑140 (MQ=255)

                                                                                        ttGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTg                                    >  2:851403/1‑140 (MQ=255)

                                                                                        ttGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTg                                    <  1:1146561/140‑1 (MQ=255)

                                                                                        ttGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTg                                    >  1:82084/1‑140 (MQ=255)

                                                                                        ttGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTg                                    <  1:965037/140‑1 (MQ=255)

                                                                                        ttGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTg                                    <  1:515234/140‑1 (MQ=255)

                                                                                          gACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGAt                                  >  1:764196/1‑140 (MQ=255)

                                                                                            cccACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTg                                    >  2:188160/1‑136 (MQ=255)

                                                                                            cccACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTg                                    <  1:188160/136‑1 (MQ=255)

                                                                                                cacTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTaa                            >  2:1248888/1‑140 (MQ=255)

                                                                                                 acTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTaaa                           >  2:1229635/1‑140 (MQ=255)

                                                                                                  cTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTaaaa                          <  2:1193354/140‑1 (MQ=255)

                                                                                                  cTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTaaaa                          <  1:851403/140‑1 (MQ=255)

                                                                                                     tGCCGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTAAAACTg                       >  1:778896/1‑140 (MQ=255)

                                                                                                       ccGTAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTAAAACTGcc                     <  1:1229635/140‑1 (MQ=255)

                                                                                                          tAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTaaaa                          >  2:320025/1‑132 (MQ=255)

                                                                                                          tAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTaaaa                          <  1:320025/132‑1 (MQ=255)

                                                                                                          tAATGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTAAAACTGCCTgg                  >  2:436844/1‑140 (MQ=255)

                                                                                                           aaTGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTAAAACTGCCt                    >  2:361588/1‑137 (MQ=255)

                                                                                                           aaTGAGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTAAAACTGCCt                    <  1:361588/137‑1 (MQ=255)

                                                                                                               aGTGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTAAAACTGCCTGGCACAg             >  1:808621/1‑140 (MQ=255)

                                                                                                                 tGACCGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTAAAACTGCCTGGCACAGCa           >  1:859434/1‑140 (MQ=255)

                                                                                                                    ccGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTAAAACTGCCTGGCACAGCAAtt        >  2:429213/1‑140 (MQ=255)

                                                                                                                    ccGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTAAAACTGCCTGGCACAGCAAtt        >  1:757742/1‑140 (MQ=255)

                                                                                                                     cGCATCGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTAAAACTGCCTGGCACAGCAATTg       >  2:1072552/1‑140 (MQ=255)

                                                                                                                          cGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTAAAACTGCCTGGCACAGCAATTGCCCgg  <  1:429213/140‑1 (MQ=255)

                                                                                                                          cGAAACGCAGCGCGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTAAAACTGCCTGGCACAGCAATTGCCCgg  <  2:764196/140‑1 (MQ=255)

ACGTACACTTTTCCCGGCAATAACATACGGCGTGACATCGGCTTCAAATGGCGTATAGCCGCCCTGATGCTCCATCACTTCCTGATTATTGACCCACACTTTGCCGTAATGAGTGACCGCATCGAAACGCAGCACGATACGCTGGCCTGCCCAACCTTTCGGTATAAAGACTTCGCGCTGATACCAGACGTTGCCCGCATAATTACGAATATCTGCATCGGCGAACTGATCGTTAAAACTGCCTGGCACAGCAATTGCCCGG  >  NC_000913/1695685‑1695946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A