Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
260 |
73.5 |
2514320 |
99.3% |
2496719 |
138.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,002,844 |
T→C |
T255A (ACA→GCA) |
fliC ← |
flagellar filament structural protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,002,844 | 0 | T | C | 100.0%
| 485.3
/ NA
| 134 | T255A (ACA→GCA) | fliC | flagellar filament structural protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (59/75); total (59/75) |
Only 100 of 134 total aligned reads displayed.
ACCAAGGTTGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCA > NC_000913/2002707‑2002974
|
ccAAGGTTGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCAcc > 1:428747/1‑140 (MQ=255)
ccAAGGTTGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCAcc < 1:1226807/140‑1 (MQ=255)
cAAGGTTGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGGCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACca > 1:84961/1‑140 (MQ=255)
cAAGGTTGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACca > 2:1052141/1‑140 (MQ=255)
cAAGGTTGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACca > 1:679255/1‑140 (MQ=255)
aaGGTTGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACcat < 1:737707/140‑1 (MQ=255)
ttGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCAtt > 1:1192546/1‑140 (MQ=255)
tcggCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCAtt > 2:521405/3‑140 (MQ=255)
ggCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAg > 1:677029/1‑140 (MQ=255)
gCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGc > 1:157577/1‑140 (MQ=255)
cAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCa < 1:709669/140‑1 (MQ=255)
cAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCa < 2:1232109/140‑1 (MQ=255)
aGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCaa < 1:416913/140‑1 (MQ=255)
gTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAAc < 2:80655/140‑1 (MQ=255)
ggAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTa < 2:40508/140‑1 (MQ=255)
ggAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTa < 2:1185403/140‑1 (MQ=255)
ggAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTa < 1:116458/140‑1 (MQ=255)
ggAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTa < 2:428747/140‑1 (MQ=255)
ggAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTa < 2:240179/140‑1 (MQ=255)
aaCCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACt < 1:66875/140‑1 (MQ=255)
cTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCg < 1:754082/140‑1 (MQ=255)
gCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTa < 2:679255/140‑1 (MQ=255)
attatCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACt < 1:146022/140‑1 (MQ=255)
attatCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACt < 2:200679/140‑1 (MQ=255)
tCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTccc > 2:342988/1‑140 (MQ=255)
tCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTccc < 1:273575/140‑1 (MQ=255)
tCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTccc < 2:1192546/140‑1 (MQ=255)
tCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTccc < 1:1150107/140‑1 (MQ=255)
cAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTa < 1:247320/123‑1 (MQ=255)
cAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTa > 2:247320/1‑123 (MQ=255)
cTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTaa < 1:336833/127‑1 (MQ=255)
cTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTaa > 2:336833/1‑127 (MQ=255)
cTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGt > 1:941679/1‑140 (MQ=255)
cTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGt > 1:77867/1‑140 (MQ=255)
cTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGt > 2:456717/1‑140 (MQ=255)
cTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGt > 1:242504/1‑140 (MQ=255)
gAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTa > 2:874862/1‑140 (MQ=255)
aaCAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTAt > 1:54368/1‑140 (MQ=255)
gtACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCaccacc > 2:762922/1‑140 (MQ=255)
ccGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATcacca < 2:318147/135‑1 (MQ=255)
ccGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGt > 2:187314/1‑140 (MQ=255)
ccGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGt > 2:470592/1‑140 (MQ=255)
ccGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGt < 2:810411/140‑1 (MQ=255)
ccGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCACCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGt > 1:1098073/1‑140 (MQ=255)
ccTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGAt > 1:514831/1‑140 (MQ=255)
tGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGAttt > 2:739597/1‑140 (MQ=255)
tGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGAttt > 2:1247070/1‑140 (MQ=255)
tGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGAttt > 2:1048545/1‑140 (MQ=255)
gAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGCGAtttt > 2:154167/1‑140 (MQ=255)
aGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCg < 1:1001691/140‑1 (MQ=255)
aGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCg < 1:470592/140‑1 (MQ=255)
tGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCa < 1:470673/140‑1 (MQ=255)
tGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCa < 1:187314/140‑1 (MQ=255)
aTAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATa < 2:677029/140‑1 (MQ=255)
aTAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATa < 1:1052141/140‑1 (MQ=255)
tAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAg > 2:25207/1‑140 (MQ=255)
aGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGt < 1:891519/140‑1 (MQ=255)
aGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGt < 1:456717/140‑1 (MQ=255)
gTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTa < 2:181213/140‑1 (MQ=255)
aGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCAt < 2:242504/140‑1 (MQ=255)
gCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCAtt < 2:1059399/140‑1 (MQ=255)
ttAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTAcc < 2:400599/140‑1 (MQ=255)
ttAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTAcc > 1:1044605/1‑140 (MQ=255)
ttAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTAcc < 2:1044605/140‑1 (MQ=255)
ttAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTAcc < 1:482338/140‑1 (MQ=255)
tagtaTTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTa < 2:118098/140‑1 (MQ=255)
tagtaTTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTa < 2:505639/140‑1 (MQ=255)
tagtaTTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTa < 1:521405/140‑1 (MQ=255)
agtaTTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTAt < 1:1048545/140‑1 (MQ=255)
agtaTTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTAt < 1:603297/140‑1 (MQ=255)
taTTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCa < 1:335151/128‑1 (MQ=255)
taTTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCa > 2:335151/1‑128 (MQ=255)
tttGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTTGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGt > 1:219591/1‑140 (MQ=255)
ttGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGta > 1:596544/1‑140 (MQ=255)
tGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTCACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGtat > 1:802946/1‑140 (MQ=255)
aTCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATaaa > 2:627254/1‑140 (MQ=255)
aGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTAt < 2:876907/128‑1 (MQ=255)
aGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTAt > 1:876907/1‑128 (MQ=255)
aGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAacac > 1:599115/1‑140 (MQ=255)
aGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAacac > 1:293017/1‑140 (MQ=255)
aGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAacac > 2:913210/1‑140 (MQ=255)
ttACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAac < 2:1129229/136‑1 (MQ=255)
ttACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAac > 1:1129229/1‑136 (MQ=255)
ttACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACAccc < 2:514831/140‑1 (MQ=255)
ttACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACAccc < 2:941679/140‑1 (MQ=255)
gCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGa > 1:326846/1‑140 (MQ=255)
tttGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGc > 2:1087132/1‑140 (MQ=255)
tttGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGc < 2:878772/140‑1 (MQ=255)
tttGCCGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGc < 2:293017/140‑1 (MQ=255)
ccGTTGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTggg < 2:499531/140‑1 (MQ=255)
ttGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTa > 1:1167367/1‑140 (MQ=255)
tGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAg < 2:599115/140‑1 (MQ=255)
tGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAg > 2:722282/1‑140 (MQ=255)
tGCTCCAGTCGCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAg < 2:326846/140‑1 (MQ=255)
gCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGt > 2:591215/1‑140 (MQ=255)
gCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGt > 2:796175/1‑140 (MQ=255)
gCCATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGt > 1:29063/1‑140 (MQ=255)
cATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTAt < 1:810001/140‑1 (MQ=255)
cATTGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTAt < 1:1184996/140‑1 (MQ=255)
ttGTCACTGCACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCa < 1:874862/140‑1 (MQ=255)
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ACCAAGGTTGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCA > NC_000913/2002707‑2002974
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
