Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,302,942 G→A T24T (ACC→ACT)  napD ← NapA signal peptide‑binding chaperone NapD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,302,9420GA98.8% 283.7 / ‑4.5 82T24T (ACC→ACT) napDNapA signal peptide‑binding chaperone NapD
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base A (40/41);  total (41/41)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.43e-01

TCTACGTTGCGTACTGACTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGGGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACAGCTGGCTGCACATGCTCCACATCCGTTG  >  NC_000913/2302814‑2303075
                                                                                                                                |                                                                                                                                     
tctACGTTGCGTACTGACTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTc                                                                                                                            >  2:630066/1‑140 (MQ=255)
 ctACGTTGCGTACTGACTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCt                                                                                                                           >  2:1049027/1‑140 (MQ=255)
       tGCGTACTGACTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAAtt                                                                                                                     >  2:589572/1‑140 (MQ=255)
        gCGTACTGACTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAAttc                                                                                                                    >  1:95411/1‑140 (MQ=255)
        gCGTACTGACTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAAttc                                                                                                                    >  1:212601/1‑140 (MQ=255)
        gCGTACTGACTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAAttc                                                                                                                    >  2:735485/1‑140 (MQ=255)
         cGTACTGACTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAAttcg                                                                                                                   >  1:1201677/1‑140 (MQ=255)
          gTACTGACTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAAttcgt                                                                                                                  >  2:661739/1‑140 (MQ=255)
           tACTGACTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAAttcgtt                                                                                                                 <  1:239117/140‑1 (MQ=255)
            aCTGACTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAAttcgttc                                                                                                                >  1:1139554/1‑140 (MQ=255)
            aCTGACTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAAttcgttc                                                                                                                >  2:1177340/1‑140 (MQ=255)
            aCTGACTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAAttcgttc                                                                                                                >  2:426792/1‑140 (MQ=255)
                aCTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCtt                                                                                                            >  1:248035/1‑140 (MQ=255)
                aCTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCtt                                                                                                            >  2:356573/1‑140 (MQ=255)
                  tCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTACACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCtttt                                                                                                          >  2:903039/1‑140 (MQ=255)
                        gTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTg                                                                                                    <  2:248035/140‑1 (MQ=255)
                           tGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAAttcgtt                                                                                                                 <  1:1165506/124‑1 (MQ=255)
                           tGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAAttcgtt                                                                                                                 >  2:1165506/1‑124 (MQ=255)
                           tGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCAc                                                                                                 >  1:316416/1‑140 (MQ=255)
                           tGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCAc                                                                                                 >  2:119471/1‑140 (MQ=255)
                            ggATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACg                                                                                                >  1:1112046/1‑140 (MQ=255)
                               tCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGAcc                                                                                             <  2:212601/140‑1 (MQ=255)
                                  gCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTgg                                                                                                        >  1:251624/1‑126 (MQ=255)
                                  gCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTgg                                                                                                        <  2:251624/126‑1 (MQ=255)
                                   cGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCTCAGCCGGGAAAGGCGTTCAGTTGAGGGCTGATGGTTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGc                                                                                         >  2:872362/1‑140 (MQ=255)
                                   cGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGc                                                                                         >  2:538422/1‑140 (MQ=255)
                                       tCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCa                                                                                     >  1:1004424/1‑140 (MQ=255)
                                       tCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCa                                                                                     >  1:140100/1‑140 (MQ=255)
                                            gTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTACACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACtt                                                                                <  1:903039/140‑1 (MQ=255)
                                             tcttctGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTg                                                                               >  2:1023467/1‑140 (MQ=255)
                                              cttctGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGc                                                                              <  2:553107/140‑1 (MQ=255)
                                              cttctGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGc                                                                              <  1:1029441/140‑1 (MQ=255)
                                                  tGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGt                                                                          <  1:517430/140‑1 (MQ=255)
                                                  tGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGt                                                                          <  1:119471/140‑1 (MQ=255)
                                                   gCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGtt                                                                         <  2:95411/140‑1 (MQ=255)
                                                   gCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGtt                                                                         <  1:1023467/140‑1 (MQ=255)
                                                     ttCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAg                                                                       <  2:556565/140‑1 (MQ=255)
                                                      tCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAgt                                                                      <  1:1185138/140‑1 (MQ=255)
                                                       ccaccaccaCAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAgtg                                                                     <  1:735485/140‑1 (MQ=255)
                                                       ccaccaccaCAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAgtg                                                                     >  2:1184102/1‑140 (MQ=255)
                                                         accaccacAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGtgtg                                                                   >  1:1068422/1‑140 (MQ=255)
                                                         accaccacAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGtgtg                                                                   >  1:117305/1‑140 (MQ=255)
                                                           caccacAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCa                                                                 <  2:117305/140‑1 (MQ=255)
                                                           caccacAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCa                                                                 <  1:1184102/140‑1 (MQ=255)
                                                            accacAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTTCAAACTTGCCAGTTAGTGTGCAt                                                                >  1:519017/1‑140 (MQ=255)
                                                              cacaATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATgg                                                              <  1:426792/140‑1 (MQ=255)
                                                                   tCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGt                                                                          <  2:722055/123‑1 (MQ=255)
                                                                   tCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGt                                                                          >  1:722055/1‑123 (MQ=255)
                                                                       cTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTcc                                                     <  2:1112046/140‑1 (MQ=255)
                                                                        tGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGAt                                                          >  2:1193828/1‑134 (MQ=255)
                                                                        tGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGAt                                                          <  1:1193828/134‑1 (MQ=255)
                                                                        tGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTcc                                                     <  1:483174/139‑1 (MQ=255)
                                                                        tGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTcc                                                     >  2:483174/1‑139 (MQ=255)
                                                                         gACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGc                                                   <  2:1139554/140‑1 (MQ=255)
                                                                          aCCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCa                                                                 >  1:283125/1‑125 (MQ=255)
                                                                          aCCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCa                                                                 <  2:283125/125‑1 (MQ=255)
                                                                          aCCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATa                                                         <  2:280554/133‑1 (MQ=255)
                                                                          aCCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATa                                                         >  1:280554/1‑133 (MQ=255)
                                                                          aCCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCa                                                  >  2:472614/1‑140 (MQ=255)
                                                                           ccGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCg                                                    >  1:769443/1‑137 (MQ=255)
                                                                           ccGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCg                                                    <  2:769443/137‑1 (MQ=255)
                                                                           ccGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCg                                                    >  1:244203/1‑137 (MQ=255)
                                                                           ccGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCg                                                    <  2:244203/137‑1 (MQ=255)
                                                                           ccGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAg                                                 >  1:860772/1‑140 (MQ=255)
                                                                             gCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGtt                                               <  2:860772/140‑1 (MQ=255)
                                                                               tCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTAt                                             >  1:550271/1‑140 (MQ=255)
                                                                               tCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTAt                                             <  2:888739/140‑1 (MQ=255)
                                                                                  gcgcGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGc                                          <  2:550271/140‑1 (MQ=255)
                                                                                          cTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCg                                  <  2:1004424/140‑1 (MQ=255)
                                                                                            gACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGa                                <  1:356573/140‑1 (MQ=255)
                                                                                              cAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACa                              <  2:1217320/140‑1 (MQ=255)
                                                                                               aGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACAg                             <  2:900453/140‑1 (MQ=255)
                                                                                                   aCTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACAgctgg                         <  1:1177340/140‑1 (MQ=255)
                                                                                                    cTTCACAGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACAgctggc                        >  2:952371/1‑140 (MQ=255)
                                                                                                        acaGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTTCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACAGCTGGCTGca                    <  2:519017/140‑1 (MQ=255)
                                                                                                          aGCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACAGCTGGCTGcaca                  <  2:1068422/140‑1 (MQ=255)
                                                                                                           gCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACAGCTGGCTGCACAt                 <  2:316416/140‑1 (MQ=255)
                                                                                                           gCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACAGCTGGCTGCACAt                 <  1:1049027/140‑1 (MQ=255)
                                                                                                           gCCGGGAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACAGCTGGCTGCACAt                 <  1:589572/140‑1 (MQ=255)
                                                                                                                gAAAGGCGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACAGCTGGCTGCACATGCTcc            >  2:1161925/1‑140 (MQ=255)
                                                                                                                      cGTTCAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACAGCTGGCTGCACATGCTCCACATcc      >  1:976070/1‑140 (MQ=255)
                                                                                                                         tCAGTTGGGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACAGCTGGCTGCACATGCTCCACATCCGtt   >  2:714087/1‑140 (MQ=255)
                                                                                                                          cAGTTGAGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACAGCTGGCTGCACATGCTCCACATCCGTTg  <  1:1161925/140‑1 (MQ=255)
                                                                                                                                |                                                                                                                                     
TCTACGTTGCGTACTGACTCAATGGTTTGGATCAGCGTTTCGCTGTCTTCTGCTTCCACCACCACAATCAACTGACCGCTCGGCGCGTCGCTGACAGCAACTTCACAGCCGGGAAAGGCGTTCAGTTGGGTGCTGATGTCTGAAATTCGTTCGCTTTTGGCCTGCACGACCAGGCTGCAAACTTGCCAGTTAGTGTGCATGGAGATACTCCGCAGTTATGGCTGATACCGGACAGCTGGCTGCACATGCTCCACATCCGTTG  >  NC_000913/2302814‑2303075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A