Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,399,538	T→C	T210A (ACG→GCG)	nuoG ←	NADH:quinone oxidoreductase subunit G

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,399,538	0	T	C	100.0%	230.8 / NA	65	T210A (ACG→GCG)	nuoG	NADH:quinone oxidoreductase subunit G
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (33/32); total (33/32)

CCGTTGTAACGGTTTTCGATACGACGCAGTTCGCCGTAACGTTCACCGGGGCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGTTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGCCCAGATCTGTACCGTC  >  NC_000913/2399402‑2399670

ccgtTGTAACGGTTTTCGATACGACGCAGTTCGCCGTAACGTTCACCGGGGCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGcttt                                                                                                                                   >  1:559675/1‑140 (MQ=255)

 cgtTGTAACGGTTTTCGATACGACGCAGTTCGCCGTAACGTTCACCGGGGCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTg                                                                                                                                  >  2:92314/1‑140 (MQ=255)

 cgtTGTAACGGTTTTCGATACGACGCAGTTCGCCGTAACGTTCACCGGGGCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTg                                                                                                                                  <  1:525656/140‑1 (MQ=255)

 cgtTGTAACGGTTTTCGATACGACGCAGTTCGCCGTAACGTTCACCGGGGCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTg                                                                                                                                  <  2:468376/140‑1 (MQ=255)

   ttGTAACGGTTTTCGATACGACGCAGTTCGCCGTAACGTTCACCGGGGCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTc                                                                                                                                <  1:1116352/140‑1 (MQ=255)

    tGTAACGGTTTTCGATACGACGCAGTTCGCCGTAACGTTCACCGGGGCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCg                                                                                                                               <  2:969014/140‑1 (MQ=255)

        aCGGTTTTCGATACGACGCAGTTCGCCGTAACGTTCACCGGGGCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTaa                                                                                                                           >  1:611325/1‑140 (MQ=255)

              ttCGATACGACGCAGTTCGCCGTAACGTTCACCGGGGCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGc                                                                                                                     >  1:158976/1‑140 (MQ=255)

                      gacgCAGTTCGCCGTAACGTTCACCGGGGCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCggg                                                                                                             >  1:1043001/1‑140 (MQ=255)

                        cgCAGTTCGCCGTAACGTTCACCGGGGCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCa                                                                                                           >  2:371169/1‑140 (MQ=255)

                                                  gCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGt                                                                                             <  2:54141/128‑1 (MQ=255)

                                                  gCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGt                                                                                             >  1:54141/1‑128 (MQ=255)

                                                  gCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAAtt                                                                                 >  1:704776/1‑140 (MQ=255)

                                                      aTGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCt                                                                             >  1:69662/1‑140 (MQ=255)

                                                      aTGTTACAGCCGATGGAACATTGCTGGCAGATGCT‑GGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCtt                                                                            >  2:1129105/1‑140 (MQ=255)

                                                          tACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTcc                                                                         <  1:110895/140‑1 (MQ=255)

                                                          tACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTcc                                                                         >  1:935542/1‑140 (MQ=255)

                                                           aCAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCa                                                                        >  2:24426/1‑140 (MQ=255)

                                                               ccGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGt                                                                    >  1:445876/1‑140 (MQ=255)

                                                                 gATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGc                                                                  <  1:61204/140‑1 (MQ=255)

                                                                 gATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGc                                                                  >  1:941498/1‑140 (MQ=255)

                                                                  aTGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGcc                                                                 >  1:343117/1‑140 (MQ=255)

                                                                  aTGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGcc                                                                 >  1:990507/1‑140 (MQ=255)

                                                                   tGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGATACCGGAAAATTCGCTTTCCAGCGTGCCg                                                                >  2:526083/1‑140 (MQ=255)

                                                                          ttGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCg                                                         <  2:445876/140‑1 (MQ=255)

                                                                           tGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCgg                                                        >  1:274739/1‑140 (MQ=255)

                                                                           tGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCgg                                                        >  1:901121/1‑140 (MQ=255)

                                                                               ggCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGa                                                    <  2:193548/140‑1 (MQ=255)

                                                                                gCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGAc                                                   >  2:589171/1‑140 (MQ=255)

                                                                                gCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGAc                                                   <  2:158976/140‑1 (MQ=255)

                                                                                    aTGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGaa                                               >  1:1028546/1‑140 (MQ=255)

                                                                                    aTGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTGCCAGCGTGCCGTCTTCCGGGCGACCGaa                                               <  2:894630/140‑1 (MQ=255)

                                                                                       cTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTa                                            >  2:880211/1‑140 (MQ=255)

                                                                                          ggCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGAc                                         >  1:1022405/1‑140 (MQ=255)

                                                                                          ggCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGAc                                         >  2:653045/1‑140 (MQ=255)

                                                                                          ggCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGAc                                         >  2:227587/1‑140 (MQ=255)

                                                                                                    gCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTgc                               <  2:69662/140‑1 (MQ=255)

                                                                                                          cccATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCAc                           <  2:1072123/138‑1 (MQ=255)

                                                                                                          cccATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCAc                           >  1:1072123/1‑138 (MQ=255)

                                                                                                            cATTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTa                       <  2:1131151/140‑1 (MQ=255)

                                                                                                             aTTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTaa                      <  2:559675/140‑1 (MQ=255)

                                                                                                             aTTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTaa                      <  2:343117/140‑1 (MQ=255)

                                                                                                             aTTTACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTACGCACCGTaa                      >  2:774606/1‑140 (MQ=255)

                                                                                                               ttACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAAc                    >  1:811267/1‑140 (MQ=255)

                                                                                                                tACGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACg                   <  1:1129105/140‑1 (MQ=255)

                                                                                                                  cGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGcc                 <  1:849433/140‑1 (MQ=255)

                                                                                                                  cGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGcc                 <  2:126430/140‑1 (MQ=255)

                                                                                                                  cGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGcc                 <  1:1127567/140‑1 (MQ=255)

                                                                                                                  cGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGcc                 <  2:754530/140‑1 (MQ=255)

                                                                                                                  cGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGcc                 <  2:941498/140‑1 (MQ=255)

                                                                                                                  cGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGcc                 <  2:628375/140‑1 (MQ=255)

                                                                                                                  cGGTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGcc                 <  1:880211/140‑1 (MQ=255)

                                                                                                                   ggTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGccc                >  1:217551/1‑140 (MQ=255)

                                                                                                                    gTTGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGCCCa               <  1:24426/140‑1 (MQ=255)

                                                                                                                      tGTAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGCCCAGa             <  2:843555/140‑1 (MQ=255)

                                                                                                                        tAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGcc                 <  1:718257/134‑1 (MQ=255)

                                                                                                                        tAACGCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGcc                 >  2:718257/1‑134 (MQ=255)

                                                                                                                            gCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGcc                 >  1:118849/1‑130 (MQ=255)

                                                                                                                            gCTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGcc                 <  2:118849/130‑1 (MQ=255)

                                                                                                                             cTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGCCCa               <  1:805130/131‑1 (MQ=255)

                                                                                                                             cTCGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGCCCa               >  2:805130/1‑131 (MQ=255)

                                                                                                                               cGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGcc                 <  1:1061297/127‑1 (MQ=255)

                                                                                                                               cGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGcc                 >  2:1061297/1‑127 (MQ=255)

                                                                                                                               cGGAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGCCCAGATCTGTACCg    <  1:92314/140‑1 (MQ=255)

                                                                                                                               cGGAGTGCGCCTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGCCCAGATCTGTACCg    <  1:860176/140‑1 (MQ=255)

                                                                                                                                ggAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGCCCAGATCTGTACCGt   <  1:589171/140‑1 (MQ=255)

                                                                                                                                 gAGTGCGCTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGCCCAGATCTGTACCGTc  >  2:56866/1‑140 (MQ=255)

CCGTTGTAACGGTTTTCGATACGACGCAGTTCGCCGTAACGTTCACCGGGGCTGATGTTACAGCCGATGGAACATTGCTGGCAGATGCTCGGCGCAAACTGCATATCCCATTTACGGTTGTAACGCTCGGAGTGCGTTTTGTCGGTAAATACGCCGGTCGGGCAAATTTCGACCAGGTTACCGGAAAATTCGCTTTCCAGCGTGCCGTCTTCCGGGCGACCGAAGTAGACGTTGTCGTGCGCACCGTAAACGCCCAGATCTGTACCGTC  >  NC_000913/2399402‑2399670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A