Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,423,045 G→A D165D (GAC→GAT)  rpnB ← recombination‑promoting nuclease RpnB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,423,0450GA100.0% 291.8 / NA 82D165D (GAC→GAT) rpnBrecombination‑promoting nuclease RpnB
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (36/46);  total (36/46)

AGCTGTCTGTCATTAGTGTTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCGTCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGC  >  NC_000913/2422914‑2423180
                                                                                                                                   |                                                                                                                                       
aGCTGTCTGTCATTAGTGTTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCgg                                                                                                                                 <  2:912173/140‑1 (MQ=255)
 gCTGTCTGTCATTAGTGTTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTAATCATCCGGc                                                                                                                                <  1:1150148/140‑1 (MQ=255)
  ctgtctgtCATTAGTGTTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGca                                                                                                                               <  1:1082392/140‑1 (MQ=255)
   tgtctgtcATTAGTGTTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGcac                                                                                                                              <  2:290340/140‑1 (MQ=255)
   tgtctgtcATTAGTGTTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGcac                                                                                                                              <  1:146075/140‑1 (MQ=255)
   tgtctgtcATTAGTGTTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGcac                                                                                                                              <  2:574221/140‑1 (MQ=255)
   tgtctgtcATTAGTGTTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGcac                                                                                                                              <  1:894192/140‑1 (MQ=255)
   tgtctgtcATTAGTGTTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGcac                                                                                                                              <  1:1205711/140‑1 (MQ=255)
        gtcATTAGTGTTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACgg                                                                                                                         <  1:711910/140‑1 (MQ=255)
        gtcATTAGTGTTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACgg                                                                                                                         <  1:15495/140‑1 (MQ=255)
        gtcATTAGTGTTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACgg                                                                                                                         <  1:731769/140‑1 (MQ=255)
           attattGTTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTaa                                                                                                                      <  2:1155821/140‑1 (MQ=255)
               gtgtTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATc                                                                                                                  >  1:209583/1‑140 (MQ=255)
                tgtTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATcc                                                                                                                 <  1:128535/140‑1 (MQ=255)
                tgtTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATcc                                                                                                                 >  1:1227815/1‑140 (MQ=255)
                 gtTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATcca                                                                                                                >  1:472611/1‑140 (MQ=255)
                   tCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATccacc                                                                                                              >  2:1185657/1‑140 (MQ=255)
                    cccTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATccacca                                                                                                             >  1:1153665/1‑140 (MQ=255)
                    cccTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATccacca                                                                                                             >  1:254613/1‑140 (MQ=255)
                              agcagcGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGc                                                                                                   >  1:303898/1‑140 (MQ=255)
                              agcagcGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGc                                                                                                   >  2:489776/1‑140 (MQ=255)
                              agcagcGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTATGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGc                                                                                                   >  2:1188891/1‑140 (MQ=255)
                              agaagcGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGc                                                                                                   >  2:554072/4‑140 (MQ=255)
                               gcagcGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGcc                                                                                                  <  2:1153665/140‑1 (MQ=255)
                               gcagcGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGcc                                                                                                  >  1:1070413/1‑140 (MQ=255)
                               gcagcGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGcc                                                                                                  >  2:991583/1‑140 (MQ=255)
                                cagcGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGaa                                                                                                       >  2:1033592/1‑134 (MQ=255)
                                cagcGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGaa                                                                                                       <  1:1033592/134‑1 (MQ=255)
                                cagcGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCg                                                                                                 >  1:1159072/1‑140 (MQ=255)
                                cagcGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCg                                                                                                 >  2:8512/1‑140 (MQ=255)
                                 agcGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGa                                                                                                <  2:499274/140‑1 (MQ=255)
                                   cGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGcc                                                                                                  <  2:602339/136‑1 (MQ=255)
                                   cGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGcc                                                                                                  >  1:602339/1‑136 (MQ=255)
                                   cGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATg                                                                                              >  1:373326/1‑140 (MQ=255)
                                   cGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATg                                                                                              >  2:597463/1‑140 (MQ=255)
                                              ggTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTg                                                                                   <  1:489776/140‑1 (MQ=255)
                                              ggTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTg                                                                                   <  2:209583/140‑1 (MQ=255)
                                              ggTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTg                                                                                   <  1:82189/140‑1 (MQ=255)
                                                tCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCg                                                                                 >  2:230987/1‑140 (MQ=255)
                                                 cGACTAATCCCAACAGATCGCGCTGACGAATATGTTTATGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCgg                                                                                <  1:1188891/140‑1 (MQ=255)
                                                    cTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCt                                                                             <  2:818464/140‑1 (MQ=255)
                                                       aTCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCtata                                                                          <  1:820445/140‑1 (MQ=255)
                                                             aCAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGc                                                                    <  2:809157/140‑1 (MQ=255)
                                                              cAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCt                                                                   >  1:472572/1‑140 (MQ=255)
                                                              cAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCt                                                                   <  1:125733/140‑1 (MQ=255)
                                                                 aTCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCgg                                                                >  1:775600/1‑140 (MQ=255)
                                                                   cgcgCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAACAGGCTCGGCa                                                              >  1:684861/1‑140 (MQ=255)
                                                                         gACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATtca                                                        >  2:111496/1‑140 (MQ=255)
                                                                          aCGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATtcat                                                       <  2:303898/140‑1 (MQ=255)
                                                                          aCGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATtcat                                                       <  2:775600/140‑1 (MQ=255)
                                                                          aCGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATtcat                                                       <  1:111496/140‑1 (MQ=255)
                                                                                    ttCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCcagca                                             >  1:646352/1‑140 (MQ=255)
                                                                                    ttCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCcagca                                             <  2:472611/140‑1 (MQ=255)
                                                                                     tCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCcagcag                                            <  2:330276/140‑1 (MQ=255)
                                                                                      cTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCaga                                           <  2:1227815/140‑1 (MQ=255)
                                                                                      cTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCaga                                           <  1:230987/140‑1 (MQ=255)
                                                                                      cTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCaga                                           <  1:1216214/140‑1 (MQ=255)
                                                                                      cTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCaga                                           <  1:1131994/140‑1 (MQ=255)
                                                                                      cTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAACAGGCTCGGCAAATTCATCAAGCCAGCaga                                           <  2:684861/140‑1 (MQ=255)
                                                                                       tGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCagag                                          <  1:80198/140‑1 (MQ=255)
                                                                                       tGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCagag                                          <  1:617042/140‑1 (MQ=255)
                                                                                       tGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCagag                                          <  1:465758/140‑1 (MQ=255)
                                                                                            tAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATtcat                                                       >  2:544988/1‑122 (MQ=255)
                                                                                            tAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATtcat                                                       <  1:544988/122‑1 (MQ=255)
                                                                                             aaCTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAata                                    >  1:1060179/1‑140 (MQ=255)
                                                                                             aaCTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAata                                    >  2:305520/1‑140 (MQ=255)
                                                                                             aaCTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAata                                    >  1:1062297/1‑140 (MQ=255)
                                                                                             aaCTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAata                                    <  2:221530/140‑1 (MQ=255)
                                                                                               cTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAat                                     <  1:373183/137‑1 (MQ=255)
                                                                                               cTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAat                                     >  2:373183/1‑137 (MQ=255)
                                                                                                   aaCAGCGCCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAataaggata                              <  2:1159072/140‑1 (MQ=255)
                                                                                                        cgcCATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGAc                         >  1:25670/1‑140 (MQ=255)
                                                                                                          ccATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACtt                       >  1:597994/1‑140 (MQ=255)
                                                                                                          ccATTTTGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACtt                       >  1:35268/1‑140 (MQ=255)
                                                                                                             ttttGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTg                    >  1:732845/1‑140 (MQ=255)
                                                                                                                tGCGGTGTTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCaa                 >  2:1114634/1‑140 (MQ=255)
                                                                                                                      gtTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGa           <  2:732845/140‑1 (MQ=255)
                                                                                                                      gtTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGa           <  1:1185657/140‑1 (MQ=255)
                                                                                                                      gtTGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGa           <  1:113842/140‑1 (MQ=255)
                                                                                                                       ttGCATAATCTCATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGAt          >  1:983386/1‑140 (MQ=255)
                                                                                                                           aTAATCTCATCATCCGGCACCACGGTAATATCCACCAGCGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGATaaaa      <  1:989034/140‑1 (MQ=255)
                                                                                                                               tctcATCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACCTCTGCAACCATGATAAAACAGc  >  1:556817/1‑140 (MQ=255)
                                                                                                                                   |                                                                                                                                       
AGCTGTCTGTCATTAGTGTTCCCTGTAACTAGCAGCGAAACAATTTGGTCGACTAATCCCAACAGATCGCGCTGACGAATATGTTTCTGAATTAACTCCAACAGCGCCATTTTGCGGTGTTGCATAATCTCGTCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGC  >  NC_000913/2422914‑2423180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A