Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,772,999 G→A pseudogene (184/1016 nt) yfjV ← CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,772,9990GA100.0% 230.9 / NA 66pseudogene (184/1016 nt)yfjVCP4‑57 prophage; putative arsenite transporter, N‑terminal fragment
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (37/29);  total (37/29)

AAGAGATACAGCATAATCAGCGTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAAC  >  NC_000913/2772867‑2773132
                                                                                                                                    |                                                                                                                                     
aagaGATACAGCATAATCAGCGTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCt                                                                                                                                >  2:755356/1‑140 (MQ=255)
  gagaTACAGCATAATCAGCGTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTgg                                                                                                                              >  1:543876/1‑140 (MQ=255)
      tACAGCATAATCAGCGTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGt                                                                                                                          <  1:711577/140‑1 (MQ=255)
         aGCATAATCAGCGTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATc                                                                                                                       >  2:752490/1‑140 (MQ=255)
          gCATAATCAGCGTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCt                                                                                                                      <  1:755356/140‑1 (MQ=255)
          gCATAATCAGCGTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCt                                                                                                                      >  1:1128639/1‑140 (MQ=255)
          gCATAATCAGCGTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCt                                                                                                                      <  2:1128639/140‑1 (MQ=255)
              aaTCAGCGTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCaa                                                                                                                  >  2:925030/1‑140 (MQ=255)
               aTCAGCGTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAAt                                                                                                                 >  1:233750/1‑140 (MQ=255)
                   gCGTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAAt                                                                                                             >  2:168508/1‑140 (MQ=255)
                     gTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTAt                                                                                                                        <  2:777860/127‑1 (MQ=255)
                     gTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTAt                                                                                                                        >  1:777860/1‑127 (MQ=255)
                     gTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATcc                                                                                                           >  2:1178932/1‑140 (MQ=255)
                     gTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATcc                                                                                                           >  2:528744/1‑140 (MQ=255)
                     gTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATcc                                                                                                           >  2:871481/1‑140 (MQ=255)
                       ggCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTg                                                                                                         <  2:299962/140‑1 (MQ=255)
                        gCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGc                                                                                                        >  1:838660/1‑140 (MQ=255)
                        gCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGc                                                                                                        >  2:536547/1‑140 (MQ=255)
                         ccGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCa                                                                                                       >  2:323144/1‑140 (MQ=255)
                          cGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAg                                                                                                      >  2:325862/1‑140 (MQ=255)
                            cAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGcc                                                                                                    <  1:536547/140‑1 (MQ=255)
                                  cTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACa                                                                                              <  1:168508/140‑1 (MQ=255)
                                         aTCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCa                                                                                       <  1:323144/140‑1 (MQ=255)
                                         aTCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCa                                                                                       <  2:774956/140‑1 (MQ=255)
                                             aCGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAgtgt                                                                                   <  1:325862/140‑1 (MQ=255)
                                              cGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTc                                                                                  <  1:875403/140‑1 (MQ=255)
                                              cGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTc                                                                                  <  2:961358/140‑1 (MQ=255)
                                               ggAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCg                                                                                 <  1:752490/140‑1 (MQ=255)
                                                   aTCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGcc                                                                             <  2:1092280/140‑1 (MQ=255)
                                                   aTCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGcc                                                                             >  2:496259/1‑140 (MQ=255)
                                                   aTCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACAATATTCACCAGGTTAGAAGCAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGcc                                                                             <  2:511474/140‑1 (MQ=255)
                                                    tCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGccc                                                                            <  1:925030/140‑1 (MQ=255)
                                                    tCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGccc                                                                            <  2:680814/140‑1 (MQ=255)
                                                    tCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGccc                                                                            <  2:981556/140‑1 (MQ=255)
                                                     cATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCt                                                                           >  2:183109/1‑140 (MQ=255)
                                                     cATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCt                                                                           >  2:777480/1‑140 (MQ=255)
                                                      aTAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTg                                                                          >  1:655649/1‑140 (MQ=255)
                                                           ggAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGccc                                                                            >  1:59198/1‑133 (MQ=255)
                                                           ggAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGccc                                                                            <  2:59198/133‑1 (MQ=255)
                                                             aGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAAc                                                                   >  1:281677/1‑140 (MQ=255)
                                                             aGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAAc                                                                   >  1:417990/1‑140 (MQ=255)
                                                             aGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAAc                                                                   >  1:762991/1‑140 (MQ=255)
                                                             aGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAAc                                                                   >  2:666379/1‑140 (MQ=255)
                                                               gCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAAccc                                                                 >  1:855116/1‑140 (MQ=255)
                                                               gCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAAccc                                                                 >  1:753948/1‑140 (MQ=255)
                                                               gCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAAccc                                                                 >  2:903070/1‑140 (MQ=255)
                                                               gCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAAccc                                                                 >  2:1041370/1‑140 (MQ=255)
                                                               gCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAAccc                                                                 >  1:435382/1‑140 (MQ=255)
                                                                  tACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGt                                                              <  1:871481/140‑1 (MQ=255)
                                                                  tACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGt                                                              <  1:496259/140‑1 (MQ=255)
                                                                       cgcAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGAt                                                         <  2:838660/140‑1 (MQ=255)
                                                                         cAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCa                                                       >  1:579519/1‑140 (MQ=255)
                                                                           aaGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGc                                                     <  1:183109/140‑1 (MQ=255)
                                                                             gCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCAt                                                   <  1:528744/140‑1 (MQ=255)
                                                                                 aGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGGGATCAGc                                                     >  1:807337/1‑134 (MQ=255)
                                                                                 aGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGGGATCAGc                                                     <  2:807337/134‑1 (MQ=255)
                                                                                        agaagTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACaa                                        >  2:687076/1‑140 (MQ=255)
                                                                                           agTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCg                                     <  2:1001530/140‑1 (MQ=255)
                                                                                           agTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCg                                     <  2:543876/140‑1 (MQ=255)
                                                                                                          tatTCACCAGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAgcg                      <  1:633627/140‑1 (MQ=255)
                                                                                                                  aGGTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCg              >  1:688520/1‑140 (MQ=255)
                                                                                                                    gTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTc            >  1:401008/1‑140 (MQ=255)
                                                                                                                    gTTAGAAACAATGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTc            >  1:1192558/1‑140 (MQ=255)
                                                                                                                              aTGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAaac  >  2:151909/1‑140 (MQ=255)
                                                                                                                              aTGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAaac  <  2:1176286/140‑1 (MQ=255)
                                                                                                                              aTGAGCAGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAaac  >  1:284466/1‑140 (MQ=255)
                                                                                                                                    |                                                                                                                                     
AAGAGATACAGCATAATCAGCGTGGCCGCAATCGCTGCCGCATCCACGGAGATCATAACGGAGGCGTACTGCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAAC  >  NC_000913/2772867‑2773132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A