Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,960,227	A→G	R734R (CGT→CGC)	recC ←	exodeoxyribonuclease V subunit RecC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,960,227	0	A	G	100.0%	237.9 / NA	66	R734R (CGT→CGC)	recC	exodeoxyribonuclease V subunit RecC
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (37/29); total (37/29)

AGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCAAAGCCCAATGGCG  >  NC_000913/2960090‑2960360

aGATGCGCTTTTACCCTTGCCTCGCTTTCATCACACTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCg                                                                                                                                     <  1:638868/140‑1 (MQ=255)

 gATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGa                                                                                                                                    <  1:1157994/140‑1 (MQ=255)

  aTGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGAc                                                                                                                                   <  2:1020698/140‑1 (MQ=255)

  aTGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGAc                                                                                                                                   <  2:1251759/140‑1 (MQ=255)

   tGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGAcc                                                                                                                                  >  1:6687/1‑140 (MQ=255)

   tGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGAcc                                                                                                                                  >  2:279926/1‑140 (MQ=255)

      gcTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGat                                                                                                                               <  1:515435/140‑1 (MQ=255)

       cTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGata                                                                                                                              >  1:436316/1‑140 (MQ=255)

          ttACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAg                                                                                                                           <  2:937778/140‑1 (MQ=255)

          ttACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAg                                                                                                                           <  1:743391/140‑1 (MQ=255)

          ttACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAg                                                                                                                           <  2:436316/140‑1 (MQ=255)

                  gCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGat                                                                                                                               <  1:781398/128‑1 (MQ=255)

                  gCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGat                                                                                                                               >  2:781398/1‑128 (MQ=255)

                  gCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGc                                                                                                                          >  2:186980/1‑133 (MQ=255)

                  gCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGc                                                                                                                          <  1:186980/133‑1 (MQ=255)

                                   gTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCgg                                                                                                  >  2:1139887/1‑140 (MQ=255)

                                       aGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGcgcg                                                                                                   <  2:627166/135‑1 (MQ=255)

                                       aGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGcgcg                                                                                                   >  1:627166/1‑135 (MQ=255)

                                         cgcTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTa                                                                                            <  1:780945/140‑1 (MQ=255)

                                              cATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGc                                                                                        <  1:932308/139‑1 (MQ=255)

                                              cATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGc                                                                                        >  2:932308/1‑139 (MQ=255)

                                                   cccGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAg                                                                                  <  2:501009/140‑1 (MQ=255)

                                                      ggTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGaa                                                                               <  2:1060093/140‑1 (MQ=255)

                                                      ggTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGaa                                                                               >  2:964917/1‑140 (MQ=255)

                                                        tAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACg                                                                                         <  1:766647/128‑1 (MQ=255)

                                                        tAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACg                                                                                         >  2:766647/1‑128 (MQ=255)

                                                          gATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGa                                                                           <  2:6687/140‑1 (MQ=255)

                                                          gATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGa                                                                           <  1:279926/140‑1 (MQ=255)

                                                                  cTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGgtc                                                                   >  2:910763/1‑140 (MQ=255)

                                                                  cTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGgtc                                                                   >  1:36577/1‑140 (MQ=255)

                                                                     tGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGgtcgtc                                                                >  1:115960/1‑140 (MQ=255)

                                                                            tGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGa                                                         >  1:1046276/1‑140 (MQ=255)

                                                                                 tCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCt                                                    >  2:604496/1‑140 (MQ=255)

                                                                                 tCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCt                                                    >  2:354177/1‑140 (MQ=255)

                                                                                      cAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGt                                               >  1:511662/1‑140 (MQ=255)

                                                                                      cAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGt                                               >  2:393540/1‑140 (MQ=255)

                                                                                         ttCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGc                                            >  1:1123654/1‑140 (MQ=255)

                                                                                           cctacACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGc                                            >  2:1198477/5‑138 (MQ=255)

                                                                                           ccTACACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGc                                            <  1:1198477/138‑1 (MQ=255)

                                                                                                   aGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCGAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCgg                                  >  1:1198942/1‑140 (MQ=255)

                                                                                                   aGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCgg                                  >  1:374213/1‑140 (MQ=255)

                                                                                                   aGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCgg                                  >  1:465694/1‑140 (MQ=255)

                                                                                                   aGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCgg                                  >  2:692374/1‑140 (MQ=255)

                                                                                                   aGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCgg                                  >  2:650484/1‑140 (MQ=255)

                                                                                                   aGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCgg                                  >  2:348523/1‑140 (MQ=255)

                                                                                                   aGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCgg                                  >  2:443253/1‑140 (MQ=255)

                                                                                                     tACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCGAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGtt                                <  2:1198942/140‑1 (MQ=255)

                                                                                                     tACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGtt                                >  1:1123909/1‑140 (MQ=255)

                                                                                                     tACCGACGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGtt                                <  1:910763/140‑1 (MQ=255)

                                                                                                          aCGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTgg                           >  1:686806/1‑140 (MQ=255)

                                                                                                          aCGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTgg                           >  2:735731/1‑140 (MQ=255)

                                                                                                          aCGGGAAACGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTgg                           >  1:1218155/1‑140 (MQ=255)

                                                                                                               aaaCGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCtcat                      <  2:514688/140‑1 (MQ=255)

                                                                                                               aaaCGCTCACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCtcat                      <  1:1139887/140‑1 (MQ=255)

                                                                                                                      cACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCa               <  1:871705/140‑1 (MQ=255)

                                                                                                                      cACTGTTATCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCa               <  1:348523/140‑1 (MQ=255)

                                                                                                                             aTCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCAAAGCCCa        <  1:393540/140‑1 (MQ=255)

                                                                                                                              tCCTGAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCAAAGCCCaa       >  1:955237/1‑140 (MQ=255)

                                                                                                                                  gAATGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCAAAGCCCAATGgc   <  2:1123654/140‑1 (MQ=255)

                                                                                                                                   aaTGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCAAAGCCCAATGgcg  >  2:548288/1‑140 (MQ=255)

                                                                                                                                   aaTGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCAAAGCCCAATGgcg  >  1:898260/1‑140 (MQ=255)

                                                                                                                                   aaTGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCAAAGCCCAATGgcg  >  1:817456/1‑140 (MQ=255)

                                                                                                                                   aaTGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCAAAGCCCAATGgcg  >  2:21490/1‑140 (MQ=255)

                                                                                                                                   aaTGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCAAAGCCCAATGgcg  <  1:443253/140‑1 (MQ=255)

                                                                                                                                     tGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGt                 >  2:216167/1‑123 (MQ=255)

                                                                                                                                     tGGAGCGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGt                 <  1:216167/123‑1 (MQ=255)

AGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCAAAGCCCAATGGCG  >  NC_000913/2960090‑2960360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A