Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,213,203	A→G	I53V (ATT→GTT)	rpoD →	RNA polymerase, sigma 70 (sigma D) factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,213,203	0	A	G	100.0%	419.5 / NA	115	I53V (ATT→GTT)	rpoD	RNA polymerase, sigma 70 (sigma D) factor
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (60/55); total (60/55)

Only 100 of 115 total aligned reads displayed.

ACAGCTGAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCGGT  >  NC_000913/3213067‑3213339

acaGCTGAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTc                                                                                                                                       <  2:176118/140‑1 (MQ=255)

acaGCTGAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTc                                                                                                                                       >  1:23648/1‑140 (MQ=255)

   gCTGAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAgg                                                                                                                                    <  2:950764/140‑1 (MQ=255)

       aaaCTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGAt                                                                                                                                <  2:221836/140‑1 (MQ=255)

          cttcttGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGga                                                                                                                             <  1:424087/140‑1 (MQ=255)

              ttGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGgaagaa                                                                                                                         >  2:767203/1‑140 (MQ=255)

              ttGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGgaagaa                                                                                                                         >  2:1120780/1‑140 (MQ=255)

              ttGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGgaagaa                                                                                                                         <  2:878083/140‑1 (MQ=255)

                 tCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCa                                                                                                                      <  1:728923/140‑1 (MQ=255)

                    cccGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCg                                                                                                                   >  1:1062966/1‑140 (MQ=255)

                    cccGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCg                                                                                                                   >  1:858376/1‑140 (MQ=255)

                      cGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGa                                                                                                                 <  2:33470/140‑1 (MQ=255)

                      cGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGa                                                                                                                 <  2:482567/140‑1 (MQ=255)

                            aaGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCga                                                                                                           <  1:767203/140‑1 (MQ=255)

                            aaGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCga                                                                                                           <  1:1056154/140‑1 (MQ=255)

                                aGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCgatgat                                                                                                       <  1:755792/140‑1 (MQ=255)

                                  cAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCt                                                                                                     >  2:636130/1‑140 (MQ=255)

                                   aaGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTg                                                                                                    >  2:105029/1‑140 (MQ=255)

                                     ggCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGa                                                                                                                 <  1:508527/125‑1 (MQ=255)

                                     ggCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGa                                                                                                                 >  2:508527/1‑125 (MQ=255)

                                     ggCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGAt                                                                                                  >  2:498360/1‑140 (MQ=255)

                                     ggCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGAt                                                                                                  >  2:1065311/1‑140 (MQ=255)

                                      gCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATg                                                                                                 <  2:1137100/140‑1 (MQ=255)

                                      gCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATg                                                                                                 <  2:858376/140‑1 (MQ=255)

                                      gCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATg                                                                                                 <  2:1062966/140‑1 (MQ=255)

                                       cTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATgc                                                                                                <  1:161204/140‑1 (MQ=255)

                                         aTCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATgctg                                                                                              <  2:351745/140‑1 (MQ=255)

                                          tCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATgctgg                                                                                             >  2:80180/1‑140 (MQ=255)

                                                 tATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGaaaa                                                                                      >  2:322585/1‑140 (MQ=255)

                                                      cGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACcg                                                                                 <  2:62663/140‑1 (MQ=255)

                                                        aGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACcgcg                                                                               >  1:559516/1‑140 (MQ=255)

                                                        aGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACcgcg                                                                               <  2:23648/140‑1 (MQ=255)

                                                        aGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACcgcg                                                                               >  2:600912/1‑140 (MQ=255)

                                                         ggTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCgg                                                                              >  1:824506/1‑140 (MQ=255)

                                                             aaTGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGa                                                                          >  1:738275/1‑140 (MQ=255)

                                                                    aTCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGAtgct                                                                   >  1:271990/1‑140 (MQ=255)

                                                                     tCTGCCGGAAGATATCGTCGATTCAGATCATATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGAtgctg                                                                  >  2:378267/1‑140 (MQ=255)

                                                                     tCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGa                                                                          <  2:1048736/132‑1 (MQ=255)

                                                                     tCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGa                                                                          >  1:1048736/1‑132 (MQ=255)

                                                                     tCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGAtgctg                                                                  >  2:80611/1‑140 (MQ=255)

                                                                             aaGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAgcc                                                          >  1:132147/1‑140 (MQ=255)

                                                                                  atCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCcgccgc                                                     >  1:403650/1‑140 (MQ=255)

                                                                                   tcgtcgATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCcgcg                                                    >  2:160385/1‑140 (MQ=255)

                                                                                    cgtcgATTCAGATCATATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCgcgc                                                   <  1:378267/140‑1 (MQ=255)

                                                                                    cgtcgATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCgcgc                                                   >  2:526808/1‑140 (MQ=255)

                                                                                    cgtcgATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCgcgc                                                   <  1:909408/140‑1 (MQ=255)

                                                                                    cgtcgATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCgcgc                                                   >  2:949730/1‑140 (MQ=255)

                                                                                    cgtcgATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCgcgc                                                   <  1:1049772/140‑1 (MQ=255)

                                                                                        gATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGt                                               <  2:822971/140‑1 (MQ=255)

                                                                                         aTTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAGAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTg                                              >  2:1171118/1‑140 (MQ=255)

                                                                                          ttCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGc                                             >  2:799297/1‑140 (MQ=255)

                                                                                               atcagatcGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGCAGCCGCCGCGCAGGAGCTTTcc                                        >  1:787734/1‑140 (MQ=255)

                                                                                                    atcGAAGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGt                                   >  1:1003441/1‑140 (MQ=255)

                                                                                                         aGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGa                                >  1:1221279/1‑138 (MQ=255)

                                                                                                         aGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGa                                <  2:1221279/138‑1 (MQ=255)

                                                                                                         aGACATCATCCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAAt                              >  2:1185428/1‑140 (MQ=255)

                                                                                                             atcatcCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGa                          >  1:438897/1‑140 (MQ=255)

                                                                                                             atcatcCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGa                          >  2:1233402/1‑140 (MQ=255)

                                                                                                              tcatcCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTTGAATCTGaa                         >  1:801901/1‑140 (MQ=255)

                                                                                                              tcatcCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGaa                         >  2:340940/1‑140 (MQ=255)

                                                                                                              tcatcCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGaa                         >  2:765315/1‑140 (MQ=255)

                                                                                                               catcCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGaaa                        >  1:701924/1‑140 (MQ=255)

                                                                                                                atcCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAAt                       >  1:959485/1‑140 (MQ=255)

                                                                                                                 tcCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATc                      <  2:555659/140‑1 (MQ=255)

                                                                                                                 tcCAAATGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATc                      <  1:105029/140‑1 (MQ=255)

                                                                                                                     aaTGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCACCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGgc                  >  1:380134/1‑140 (MQ=255)

                                                                                                                      aTGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGgcg                 <  1:80611/140‑1 (MQ=255)

                                                                                                                      aTGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGgcg                 <  1:426710/140‑1 (MQ=255)

                                                                                                                      aTGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGgcg                 <  1:340940/140‑1 (MQ=255)

                                                                                                                      aTGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGgcg                 <  1:1181793/140‑1 (MQ=255)

                                                                                                                      aTGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGgcg                 >  2:530937/1‑140 (MQ=255)

                                                                                                                      aTGATCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCACCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGgcg                 <  2:380134/140‑1 (MQ=255)

                                                                                                                         aTCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCAc              >  2:559859/1‑140 (MQ=255)

                                                                                                                         aTCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCAc              >  1:1023050/1‑140 (MQ=255)

                                                                                                                         aTCAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCAc              >  2:241002/1‑140 (MQ=255)

                                                                                                                           cAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGa            <  1:530937/140‑1 (MQ=255)

                                                                                                                           cAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGa            <  2:559516/140‑1 (MQ=255)

                                                                                                                           cAACGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGa            >  1:696269/1‑140 (MQ=255)

                                                                                                                             aCGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACt          >  1:626734/1‑140 (MQ=255)

                                                                                                                              cGACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTg         >  1:636744/1‑140 (MQ=255)

                                                                                                                               gACATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGa        <  2:824506/140‑1 (MQ=255)

                                                                                                                                aCATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGAc       >  1:706763/1‑140 (MQ=255)

                                                                                                                                 cATGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGAcc      >  2:47952/1‑140 (MQ=255)

                                                                                                                                   tGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCg    <  2:955147/140‑1 (MQ=255)

                                                                                                                                   tGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCg    >  1:959162/1‑140 (MQ=255)

                                                                                                                                   tGGGCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCg    <  2:271990/140‑1 (MQ=255)

                                                                                                                                    gggCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCgg   >  1:7535/1‑140 (MQ=255)

                                                                                                                                    gggCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCgg   >  1:910255/1‑140 (MQ=255)

                                                                                                                                    gggCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCgg   >  1:974717/1‑140 (MQ=255)

                                                                                                                                    gggCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCgg   >  2:168302/1‑140 (MQ=255)

                                                                                                                                    gggCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCgg   >  2:191852/1‑140 (MQ=255)

                                                                                                                                    gggCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCgg   <  1:1233402/140‑1 (MQ=255)

                                                                                                                                     ggCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGa        <  1:376810/134‑1 (MQ=255)

                                                                                                                                     ggCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCGGt  <  2:706763/140‑1 (MQ=255)

                                                                                                                                     ggCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCGGt  <  1:949730/140‑1 (MQ=255)

                                                                                                                                     ggCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCGGt  <  1:636130/140‑1 (MQ=255)

                                                                                                                                     ggCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCGGt  <  1:526808/140‑1 (MQ=255)

                                                                                                                                     ggCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCGGt  <  1:322585/140‑1 (MQ=255)

                                                                                                                                     ggCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCGGt  <  2:910255/140‑1 (MQ=255)

                                                                                                                                     ggCGTTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCGGt  <  1:168302/140‑1 (MQ=255)

ACAGCTGAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGGCTGAAAACACCGCGGACGAAGATGCTGCCGAAGCCGCCGCGCAGGTGCTTTCCAGCGTGGAATCTGAAATCGGGCGCACGACTGACCCGGT  >  NC_000913/3213067‑3213339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A