Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,669,830	A→G	D80G (GAC→GGC)	treF →	cytoplasmic trehalase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,669,830	0	A	G	100.0%	286.7 / NA	81	D80G (GAC→GGC)	treF	cytoplasmic trehalase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (38/43); total (38/43)

ATCGAGGCAGAACCGGAACCCGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGACTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGAGGTCTACTCCAGCGAGTATGTATC  >  NC_000913/3669694‑3669965

atCGAGGCAGAACCGGAACCCGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTg                                                                                                                                      <  2:122263/140‑1 (MQ=255)

atCGAGGCAGAACCGGAACCCGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTg                                                                                                                                      >  1:835203/1‑140 (MQ=255)

 tCGAGGCAGAACCGGAACCCGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTgc                                                                                                                                     >  1:341149/1‑140 (MQ=255)

 tCGAGGAAAAACCGAACCCCGGGAGGATTAAGGGGCTGCCTGCCTCTGATGCGTTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTgc                                                                                                                                     <  2:341149/140‑1 (MQ=255)

   gAGGCAGAACCGGAACCCGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTgcgc                                                                                                                                   <  2:1065175/140‑1 (MQ=255)

     ggCAGAACCGGAACCCGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCAc                                                                                                                                 <  1:924899/140‑1 (MQ=255)

      gCAGAACCGGAACCCGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCAcc                                                                                                                                <  2:101289/140‑1 (MQ=255)

      gCAGAACCGGAACCCGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCAcc                                                                                                                                >  2:1159232/1‑140 (MQ=255)

       cAGAACCGGAACCCGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCt                                                                                                                               >  1:209961/1‑140 (MQ=255)

          aaCCGGAACCCGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTaaa                                                                                                                            >  2:75985/1‑140 (MQ=255)

              ggAACCCGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATgg                                                                                                                        <  1:959997/140‑1 (MQ=255)

                 aCCCGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGAcc                                                                                                                     <  2:1208400/140‑1 (MQ=255)

                  cccGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGAccc                                                                                                                    <  1:28891/140‑1 (MQ=255)

                   ccGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCg                                                                                                                   <  1:1159232/140‑1 (MQ=255)

                   ccGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCg                                                                                                                   <  1:106693/140‑1 (MQ=255)

                    cGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGc                                                                                                                  >  1:551996/1‑140 (MQ=255)

                      agaTGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGAccc                                                                                                                    >  2:882958/1‑136 (MQ=255)

                      agaTGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGAccc                                                                                                                    <  1:882958/136‑1 (MQ=255)

                       gatgatTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTgg                                                                                                               <  2:833537/140‑1 (MQ=255)

                       gatgatTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTgg                                                                                                               <  1:723571/140‑1 (MQ=255)

                       gatgatTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTgg                                                                                                               <  2:970990/140‑1 (MQ=255)

                       gatgatTGAAGGGCTGCCTGCCTCTGATGCGCGGCCGCCTGCGGTTCGTTTTCTCGACCTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTgg                                                                                                               <  2:835203/140‑1 (MQ=255)

                         tgatTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGat                                                                                                             >  2:268398/1‑140 (MQ=255)

                             tGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCt                                                                                                         >  2:104796/1‑140 (MQ=255)

                             tGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCt                                                                                                         <  1:285404/140‑1 (MQ=255)

                              gAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCtt                                                                                                        >  1:844620/1‑140 (MQ=255)

                                aGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTaa                                                                                                      <  1:134985/140‑1 (MQ=255)

                                  ggCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATc                                                                                                    <  2:844620/140‑1 (MQ=255)

                                    ctgcctgcCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCg                                                                                                  <  2:209961/140‑1 (MQ=255)

                                    ctgcctgcCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCg                                                                                                  >  1:813493/1‑140 (MQ=255)

                                    ctgcctgcCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCg                                                                                                  <  2:809745/140‑1 (MQ=255)

                                    ctgcctgcCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCg                                                                                                  <  1:656492/140‑1 (MQ=255)

                                    ctgcctgcCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCg                                                                                                  <  2:359291/140‑1 (MQ=255)

                                     tgcctgccTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGc                                                                                                 >  1:18300/1‑140 (MQ=255)

                                     tgcctgccTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTCTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGc                                                                                                 <  1:1097623/140‑1 (MQ=255)

                                      gcctgcctCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCt                                                                                                <  2:916209/140‑1 (MQ=255)

                                           cctCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCG‑AAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTa                                                                                          <  2:296938/140‑1 (MQ=255)

                                                 aTGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTg                                                                                     <  1:104796/140‑1 (MQ=255)

                                                      cTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCg                                                                                >  1:847876/1‑140 (MQ=255)

                                                      cTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCg                                                                                >  2:1118317/1‑140 (MQ=255)

                                                           gCCTGCCGATCGCTTTCTCGACCTGTTCGAGTATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATc                                                                           <  2:18300/140‑1 (MQ=255)

                                                                ccGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGAt                                                                      >  1:444840/1‑140 (MQ=255)

                                                                ccGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGAt                                                                      >  2:203231/1‑140 (MQ=255)

                                                                   aTCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGAtttt                                                                   >  1:837648/1‑140 (MQ=255)

                                                                     cGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGa                                                                 >  2:1182017/1‑140 (MQ=255)

                                                                     cGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGa                                                                 >  2:267734/1‑140 (MQ=255)

                                                                      gCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGAc                                                                <  1:203231/140‑1 (MQ=255)

                                                                          tctcGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTgc                                                            >  2:933442/1‑140 (MQ=255)

                                                                              gAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCaa                                                        <  2:837648/140‑1 (MQ=255)

                                                                               aaCTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGAc                                                                >  2:212943/1‑131 (MQ=255)

                                                                               aaCTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGAc                                                                <  1:212943/131‑1 (MQ=255)

                                                                               aaCTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAg                                                       >  1:1172248/1‑140 (MQ=255)

                                                                                  tGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTAGCGCAAGttt                                                    >  1:1059743/1‑140 (MQ=255)

                                                                                    ttCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTttgt                                                  >  1:105154/1‑140 (MQ=255)

                                                                                    ttCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTttgt                                                  >  2:102894/1‑140 (MQ=255)

                                                                                    ttCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTttgt                                                  >  1:95008/1‑140 (MQ=255)

                                                                                      cGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTttgttg                                                <  2:1172248/140‑1 (MQ=255)

                                                                                        aGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGaa                                              <  2:95008/140‑1 (MQ=255)

                                                                                              ttCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCAc                                        >  2:926934/1‑140 (MQ=255)

                                                                                              ttCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCAc                                        >  1:1170410/1‑140 (MQ=255)

                                                                                                cAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACtt                                      <  1:549608/140‑1 (MQ=255)

                                                                                                  gTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCt                                    >  1:985648/1‑140 (MQ=255)

                                                                                                   tCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTttgttg                                                >  1:759743/1‑127 (MQ=255)

                                                                                                   tCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTttgttg                                                <  2:759743/127‑1 (MQ=255)

                                                                                                      gCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCt                                >  2:903592/1‑140 (MQ=255)

                                                                                                       cgcaaaTTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCtt                               >  2:678976/4‑139 (MQ=255)

                                                                                                       cGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAAcc                                          <  2:36735/129‑1 (MQ=255)

                                                                                                       cGAAAATTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAAcc                                          >  1:36735/1‑129 (MQ=255)

                                                                                                          aaaTTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCg                            <  2:444840/140‑1 (MQ=255)

                                                                                                          aaaTTTTCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCg                            <  1:903592/140‑1 (MQ=255)

                                                                                                               ttCCCCGACAGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGAGGt                       <  2:985648/140‑1 (MQ=255)

                                                                                                                        aGTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGAGGTCTACTCCAg              <  1:199527/140‑1 (MQ=255)

                                                                                                                         gTAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGAGGTCTACTCCAGc             <  1:788641/140‑1 (MQ=255)

                                                                                                                          tAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGAGGTCTACTCCAGCg            <  1:933442/140‑1 (MQ=255)

                                                                                                                          tAAAACCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGAGGTCTACTCCAGCg            >  1:863224/1‑140 (MQ=255)

                                                                                                                            aaaCCTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGAGGTCTACTCCAGCGAg          <  2:1200309/140‑1 (MQ=255)

                                                                                                                                cTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGAGGTCTACTCCAGCGGgt         <  2:586743/137‑1 (MQ=255)

                                                                                                                                cTTTCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGAGGTCTACTCCAGCGAgt         >  1:586743/1‑137 (MQ=255)

                                                                                                                                  ttCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGAGGTCTACTCCAGCGAgtatgta    >  2:733264/1‑140 (MQ=255)

                                                                                                                                  ttCCCGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGAGGTCTACTCCAGCGAgtatgta    >  2:382032/1‑140 (MQ=255)

                                                                                                                                    cccGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGAGGTCTACTCCAGCGAGTATGTATc  >  2:880474/1‑140 (MQ=255)

                                                                                                                                    cccGGCTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGAGGTCTACTCCAGCGAGTATGTATc  >  2:1043830/1‑140 (MQ=255)

ATCGAGGCAGAACCGGAACCCGAGATGATTGAAGGGCTGCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAAATTTTCCCCGACAGTAAAACCTTTCCCGACTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCTACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGAGGTCTACTCCAGCGAGTATGTATC  >  NC_000913/3669694‑3669965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A