Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,919,120	G→A	G246G (GGC→GGT)	atpA ←	ATP synthase F1 complex subunit alpha

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,919,120	0	G	A	100.0%	263.9 / NA	77	G246G (GGC→GGT)	atpA	ATP synthase F1 complex subunit alpha
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (42/35); total (42/35)

GAAAACGTCGCCCGGGAATGCTTCACGTCCTGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCGCCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTCCAGTTTACGTACCACGTTAGAAATGGTGGACGCT  >  NC_000913/3918985‑3919255

gAAAACGTCGCCCGGGAATGCTTCACGTCCTGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCa                                                                                                                                     >  1:130156/1‑140 (MQ=255)

     cGTCGCCCGGGAATGCTTCACGTCCTGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTgcg                                                                                                                                >  2:1061067/1‑140 (MQ=255)

       tCGCCCGGGAATGCTTCACGTCCTGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCa                                                                                                                              >  2:239899/1‑140 (MQ=255)

        cGCCCGGGAATGCTTCACGTCCTGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCaa                                                                                                                             >  1:32316/1‑140 (MQ=255)

        cGCCCGGGAATGCTTCACGTCCTGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCaa                                                                                                                             <  2:644401/140‑1 (MQ=255)

                aaTGCTTCACGTCCTGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATa                                                                                                                     <  2:609590/140‑1 (MQ=255)

                aaTGCTTCACGTCCTGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATa                                                                                                                     <  1:557877/140‑1 (MQ=255)

                       cACGTCCTGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGcc                                                                                                              <  1:394947/140‑1 (MQ=255)

                       cACGTCCTGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGcc                                                                                                              <  1:701798/140‑1 (MQ=255)

                       cACGTCCTGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGcc                                                                                                              >  1:763993/1‑140 (MQ=255)

                         cGTCCTGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAg                                                                                                            >  2:1031535/1‑140 (MQ=255)

                              tGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATa                                                                                                                     >  1:1117363/1‑126 (MQ=255)

                              tGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTACACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATa                                                                                                                     <  2:1117363/126‑1 (MQ=255)

                                        cgGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGc                                                                                             >  2:153593/1‑140 (MQ=255)

                                          gAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCgg                                                                                           >  2:830745/1‑140 (MQ=255)

                                                cagGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAg                                                                                     >  2:903800/1‑140 (MQ=255)

                                                 agGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGa                                                                                    <  2:214602/140‑1 (MQ=255)

                                                   ggAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGAcg                                                                                  <  1:1069615/140‑1 (MQ=255)

                                                     agaTCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGAcgcg                                                                                <  1:153593/140‑1 (MQ=255)

                                                     agaTCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGAcgcg                                                                                >  2:44770/1‑140 (MQ=255)

                                                       aTCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGt                                                                              <  1:432780/140‑1 (MQ=255)

                                                       aTCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGt                                                                              >  2:34770/1‑140 (MQ=255)

                                                         cTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTg                                                                            <  1:1100760/140‑1 (MQ=255)

                                                           gACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCt                                                                          >  2:913620/1‑140 (MQ=255)

                                                            aCGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTa                                                                         >  1:511311/1‑140 (MQ=255)

                                                               gTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACca                                                                      <  1:239899/140‑1 (MQ=255)

                                                                     aaCAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGa                                                                <  1:44770/140‑1 (MQ=255)

                                                                     aaCAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGa                                                                <  1:913620/140‑1 (MQ=255)

                                                                     aaCAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGa                                                                <  1:1148456/140‑1 (MQ=255)

                                                                     aaCAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGa                                                                <  1:555554/140‑1 (MQ=255)

                                                                     aaCAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGa                                                                <  1:34770/140‑1 (MQ=255)

                                                                     aaCAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGa                                                                <  1:275771/140‑1 (MQ=255)

                                                                     aaCAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGa                                                                <  2:379102/140‑1 (MQ=255)

                                                                     aaCAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGCTGCTACCACAACGa                                                                <  1:830745/140‑1 (MQ=255)

                                                                         gCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGgt                                                            >  1:239726/1‑140 (MQ=255)

                                                                              tttAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAg                                                       >  2:814153/1‑140 (MQ=255)

                                                                                 aGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCa                                                    >  2:374170/1‑140 (MQ=255)

                                                                                      ggTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGa                                                                >  1:718656/1‑123 (MQ=255)

                                                                                      ggTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGa                                                                <  2:718656/123‑1 (MQ=255)

                                                                                      ggTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTgcg                                               <  2:271531/140‑1 (MQ=255)

                                                                                      ggTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTgcg                                               >  1:482144/1‑140 (MQ=255)

                                                                                      ggTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTgcg                                               >  1:271531/1‑140 (MQ=255)

                                                                                       gTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGa                                                                >  2:190665/1‑122 (MQ=255)

                                                                                       gTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGa                                                                <  1:190665/122‑1 (MQ=255)

                                                                                       gTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGa                                                                >  2:1033911/1‑122 (MQ=255)

                                                                                       gTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGa                                                                <  1:1033911/122‑1 (MQ=255)

                                                                                       gTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGtt                                                         >  2:24913/1‑129 (MQ=255)

                                                                                       gTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGtt                                                         <  1:24913/129‑1 (MQ=255)

                                                                                       gTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTgcgc                                              >  2:1106011/1‑140 (MQ=255)

                                                                                       gTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTgcgc                                              >  1:24662/1‑140 (MQ=255)

                                                                                       gTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTgcgc                                              >  1:475987/1‑140 (MQ=255)

                                                                                        tCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCATCCGGCATACGGTGCCAGGTATTGCAGTGCAGAGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGcc                                             >  2:867135/1‑140 (MQ=255)

                                                                                        tCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAGCGATGgtg                                                           >  1:888374/1‑126 (MQ=255)

                                                                                        tCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATg                                                              <  2:63360/123‑1 (MQ=255)

                                                                                        tCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATg                                                              >  1:63360/1‑123 (MQ=255)

                                                                                        tCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGgtg                                                           <  2:888374/126‑1 (MQ=255)

                                                                                        tCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGcc                                             >  2:935805/1‑140 (MQ=255)

                                                                                        tCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGcc                                             >  1:1079210/1‑140 (MQ=255)

                                                                                        tCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGcc                                             >  1:265564/1‑140 (MQ=255)

                                                                                        tCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGcc                                             >  1:534412/1‑140 (MQ=255)

                                                                                        tCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGcc                                             >  2:418151/1‑140 (MQ=255)

                                                                                           tCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTg                                          <  2:511311/140‑1 (MQ=255)

                                                                                           tCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTg                                          <  2:1111523/140‑1 (MQ=255)

                                                                                                 aTGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTc                                    >  1:182112/1‑140 (MQ=255)

                                                                                                  tGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTcc                                   <  1:814153/140‑1 (MQ=255)

                                                                                                  tGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTcc                                   <  2:32316/140‑1 (MQ=255)

                                                                                                  tGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTcc                                   <  2:1176430/140‑1 (MQ=255)

                                                                                                    aTCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGGGCAACCGGCATACGGTGCGAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTCCAg                                 >  2:1118638/1‑140 (MQ=255)

                                                                                                     tCAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTCCAGt                                <  2:239726/140‑1 (MQ=255)

                                                                                                      cAGCGCATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTCCAGtt                               >  1:194071/1‑140 (MQ=255)

                                                                                                          gcATCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTCCAGTTTACg                           <  2:265564/140‑1 (MQ=255)

                                                                                                             tCTTCACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTCCAGTTTACGTAc                        <  2:130156/140‑1 (MQ=255)

                                                                                                                 cACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTCCAGTTTACGTACCACg                    >  2:472994/1‑140 (MQ=255)

                                                                                                                 cACCGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTCCAGTTTACGTACCACg                    >  2:1228288/1‑140 (MQ=255)

                                                                                                                   ccGCGGTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTCCAGTTTACGTACCACGtt                  >  1:390777/1‑140 (MQ=255)

                                                                                                                        gTCACGGAAGTATTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTCCAGTTTACGTACCACGTTAGaaa             >  1:1207178/1‑140 (MQ=255)

                                                                                                                                   aTTCACCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTCCAGTTTACGTACCACGTTAGAAATGGTGGACGCt  >  1:514627/1‑140 (MQ=255)

GAAAACGTCGCCCGGGAATGCTTCACGTCCTGGCGGACGACGGAGCAGCAGGGAGATCTGACGGTAAGCAACAGCCTGTTTAGACAGGTCATCGTAAATGATCAGCGCATCTTCACCGCGGTCACGGAAGTATTCGCCCATTGCGCAACCGGCATACGGTGCCAGGTATTGCAGTGCAGCGGATTCAGACGCGGTTGCTACCACAACGATGGTGTTAGCCAGTGCGCCGTGCTCTTCCAGTTTACGTACCACGTTAGAAATGGTGGACGCT  >  NC_000913/3918985‑3919255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A