Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
260 |
73.5 |
2514320 |
99.3% |
2496719 |
138.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,948,080 |
T→C |
intergenic (‑113/‑6) |
hdfR ← / → maoP |
DNA‑binding transcriptional dual regulator HdfR/macrodomain Ori protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,948,080 | 0 | T | C | 95.1%
| 264.6
/ 2.4
| 82 | intergenic (‑113/‑6) | hdfR/maoP | DNA‑binding transcriptional dual regulator HdfR/macrodomain Ori protein |
| Reads supporting (aligned to +/- strand): ref base T (2/2); new base C (48/30); total (50/32) |
| Fisher's exact test for biased strand distribution p-value = 6.41e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.35e-01 |
GTTTTTAACAATTCCGTATCCACAGTGCTCTCCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGTGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTCATGGTTATGCCTTCAATGAGT > NC_000913/3947945‑3948218
|
gTTTTTAACAATTCCGTATCCACAGTGCTCTCCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGTGCAg > 1:1006701/1‑140 (MQ=255)
aaTTCCGTATCCACAGTGCTCTCCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGa < 1:775812/140‑1 (MQ=255)
ttCCGTATCCACAGTGCTCTCCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGaat > 1:553281/1‑139 (MQ=255)
ttCCGTATCCACAGTGCTCTCCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGaaa > 1:144146/1‑140 (MQ=255)
aGTGCTCTCCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTAcgacga > 1:652154/1‑140 (MQ=255)
aGTGCTCTCCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTAcgacga > 2:210064/1‑140 (MQ=255)
aGTGCTCTCCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTAcgacga > 2:271166/1‑140 (MQ=255)
gTGCTCTCCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACgacgac < 1:1046611/140‑1 (MQ=255)
tGCTCTCCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGa > 2:953445/1‑124 (MQ=255)
tGCTCTCCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGa < 1:953445/124‑1 (MQ=255)
tctcCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAAt > 2:234446/1‑140 (MQ=255)
tcCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCg > 1:847042/1‑140 (MQ=255)
cGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGat > 1:183145/1‑140 (MQ=255)
gCAAAATTATTTGTCGTTATGATTTAGATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGata > 2:734938/1‑140 (MQ=255)
gCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGata > 1:686993/1‑140 (MQ=255)
aaaaTTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATAtt > 2:620513/1‑140 (MQ=255)
aaaTTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATAttt < 1:1256777/140‑1 (MQ=255)
aaaTTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATAttt < 2:883492/140‑1 (MQ=255)
attattTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCg < 2:652154/140‑1 (MQ=255)
tttGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACaa > 1:536903/1‑140 (MQ=255)
tATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACAtt > 2:901583/1‑140 (MQ=255)
aTGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTa < 1:901583/140‑1 (MQ=255)
gATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATc < 2:686993/140‑1 (MQ=255)
tttAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCa < 2:202724/140‑1 (MQ=255)
tgttttgtttTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGa < 1:210064/140‑1 (MQ=255)
tttgttttACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAGAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATtc > 1:932084/1‑140 (MQ=255)
ttgttttACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGTTCGGTCAAAGAATTAGGAGCGTGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATtct < 2:1006701/140‑1 (MQ=255)
ttgttttACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATtct > 1:820648/1‑140 (MQ=255)
tctGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGt > 1:1090979/1‑140 (MQ=255)
tGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGa > 1:513304/1‑140 (MQ=255)
tGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGa > 1:45944/1‑140 (MQ=255)
tGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGa > 2:1204162/1‑140 (MQ=255)
tGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTC‑AAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGAt > 2:893291/1‑140 (MQ=255)
aGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCa > 1:801519/1‑140 (MQ=255)
aaCTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATc > 1:105459/1‑140 (MQ=255)
aaCTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATc > 1:259476/1‑140 (MQ=255)
aCTAATACTCCGCGCCATAACTAGCTCGGTC‑AAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCaa < 1:893291/140‑1 (MQ=255)
cTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCaa < 2:801519/140‑1 (MQ=255)
cTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCaa > 2:671185/1‑140 (MQ=255)
cTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCaa > 2:1137556/1‑140 (MQ=255)
cTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCaa > 2:1103906/1‑140 (MQ=255)
tACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAagag > 2:915465/1‑140 (MQ=255)
tACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAagag > 1:1038650/1‑140 (MQ=255)
aCTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAgg > 1:233225/1‑140 (MQ=255)
ccGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGcac < 1:915465/140‑1 (MQ=255)
cgcgCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTc < 1:1122142/123‑1 (MQ=255)
cgcgCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGcaca > 2:1064101/1‑140 (MQ=255)
cgcgCCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACACTATCCACGTGGATTCTCTCGTCATGGTGATTTc > 2:1122142/1‑123 (MQ=255)
gcgcCATGACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACaa > 1:780605/1‑140 (MQ=255)
gcgcCATAACTAGCTCGGTCAAAGAATTAGGAGCGTGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACaa > 1:184975/1‑140 (MQ=255)
gcgcCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACaa > 1:856322/1‑140 (MQ=255)
gcgcCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACaa > 2:608045/1‑140 (MQ=255)
cgcCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAAc > 1:1115815/1‑140 (MQ=255)
cgcCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAAc > 2:1168149/1‑140 (MQ=255)
cgcCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAAc > 2:692525/1‑140 (MQ=255)
cgcCATAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAAc > 2:246536/1‑140 (MQ=255)
tAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAATGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCtt < 2:553281/140‑1 (MQ=255)
tAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATCTTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCtt < 2:1090979/140‑1 (MQ=255)
tAACTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCtt > 1:236250/1‑140 (MQ=255)
aaCTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTg < 2:887859/140‑1 (MQ=255)
aaCTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTg < 2:45944/140‑1 (MQ=255)
cTAGCTCGGTCAGAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGACGCACAACTGCTTGAg < 2:932084/140‑1 (MQ=255)
cTAGCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAg < 1:734938/140‑1 (MQ=255)
gCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAg < 2:801631/137‑1 (MQ=255)
gCTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAg > 1:801631/1‑137 (MQ=255)
cTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTc < 1:1064101/140‑1 (MQ=255)
cTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTc < 1:234446/140‑1 (MQ=255)
cTCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTc < 1:692525/140‑1 (MQ=255)
tCGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTCa > 2:167092/1‑140 (MQ=255)
cGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCtt > 2:426339/1‑131 (MQ=255)
cGGTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCtt < 1:426339/131‑1 (MQ=255)
ggTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTCATg > 2:174997/1‑140 (MQ=255)
gTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTCATgg > 1:491320/1‑140 (MQ=255)
gTCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTCATgg > 1:374552/1‑140 (MQ=255)
tCAAAGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTCATGGt > 1:116890/1‑140 (MQ=255)
aaaGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTCATGGTTa < 2:780605/140‑1 (MQ=255)
aaaGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTCATGGTTa < 2:259476/140‑1 (MQ=255)
aGAATTAGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTCATGGTTATg < 2:513304/140‑1 (MQ=255)
aGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTCATGGTTATGCCTTCa < 2:144146/140‑1 (MQ=255)
aGGAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTCATGGTTATGCCTTCa > 1:713066/1‑140 (MQ=255)
gAGCGCGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTCATGGTTATGCCTTCAAt < 1:1137556/140‑1 (MQ=255)
gTGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTCATGGTTATGCCTTCAATGAGt < 2:184975/140‑1 (MQ=255)
|
GTTTTTAACAATTCCGTATCCACAGTGCTCTCCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAATACTCCGCGCCATAACTAGCTCGGTCAAAGAATTAGGAGCGTGCAGGATGGCGGAAAGCTTTACGACGACTAATCGATATTTCGACAATAAACATTATCCACGTGGATTCTCTCGTCATGGTGATTTCACCATCAAAGAGGCACAACTGCTTGAGCGTCATGGTTATGCCTTCAATGAGT > NC_000913/3947945‑3948218
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
