Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,050,105	A→G	intergenic (+98/+28)	spf → / ← yihA	small regulatory RNA Spot 42/GTP‑binding protein YihA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,050,105	0	A	G	100.0%	250.8 / NA	69	intergenic (+98/+28)	spf/yihA	small regulatory RNA Spot 42/GTP‑binding protein YihA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (44/25); total (44/25)

TTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGTTTCTTCAACGAAGAAAACGTTT  >  NC_000913/4049968‑4050239

ttttAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTc                                                                                                                                      <  1:1089863/140‑1 (MQ=255)

       cgccCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGcaca                                                                                                                               <  1:457693/140‑1 (MQ=255)

       cgccCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGcaca                                                                                                                               <  2:332849/140‑1 (MQ=255)

                        aCTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGaaa                                                                                                              >  1:532172/1‑140 (MQ=255)

                          tGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAat                                                                                                            >  1:1041508/1‑140 (MQ=255)

                             ggCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAattat                                                                                                         >  2:115899/1‑140 (MQ=255)

                             ggCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAattat                                                                                                         >  1:747363/1‑140 (MQ=255)

                             ggCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAattat                                                                                                         >  2:351389/1‑140 (MQ=255)

                             ggCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAattat                                                                                                         >  2:531327/1‑140 (MQ=255)

                             ggCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAattat                                                                                                         >  2:984629/1‑140 (MQ=255)

                               cGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTc                                                                                                       >  1:385876/1‑140 (MQ=255)

                                gTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCg                                                                                                      <  1:308059/140‑1 (MQ=255)

                                 ttttttATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGc                                                                                                     >  1:1010826/1‑140 (MQ=255)

                                 ttttttATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGc                                                                                                     >  2:551053/1‑140 (MQ=255)

                                     ttATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTc                                                                                                 <  2:532172/140‑1 (MQ=255)

                                      tATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTcc                                                                                                <  2:533786/140‑1 (MQ=255)

                                         tGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGc                                                                                             <  1:551053/140‑1 (MQ=255)

                                           ggCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGt                                                                                           >  1:435476/1‑140 (MQ=255)

                                           ggCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGt                                                                                           <  2:1041508/140‑1 (MQ=255)

                                             cGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAatt                                                                                                           <  1:825985/122‑1 (MQ=255)

                                             cGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAatt                                                                                                           >  2:825985/1‑122 (MQ=255)

                                                   aaaagaTCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTa                                                                                   <  1:519489/140‑1 (MQ=255)

                                                    aaagaTCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTAc                                                                                  <  1:1193757/140‑1 (MQ=255)

                                                            gTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCa                                                                          >  2:844202/1‑140 (MQ=255)

                                                             tAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCAt                                                                         >  1:404913/1‑140 (MQ=255)

                                                             tAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCAt                                                                         >  1:636590/1‑140 (MQ=255)

                                                                   cTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCt                                                                   <  1:115899/140‑1 (MQ=255)

                                                                     gATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTaa                                                                 <  2:266867/140‑1 (MQ=255)

                                                                     gATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTaa                                                                 >  2:1154689/1‑140 (MQ=255)

                                                                       tGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAAc                                                               <  1:655207/140‑1 (MQ=255)

                                                                       tGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAAc                                                               >  1:1119216/1‑140 (MQ=255)

                                                                           cTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCg                                                                     <  1:677295/130‑1 (MQ=255)

                                                                           cTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCg                                                                     >  2:677295/1‑130 (MQ=255)

                                                                           cTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAgg                                                           >  2:290700/1‑140 (MQ=255)

                                                                           cTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAgg                                                           >  1:906240/1‑140 (MQ=255)

                                                                            tATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGt                                                          >  1:1090432/1‑140 (MQ=255)

                                                                            tATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGt                                                          >  2:246730/1‑140 (MQ=255)

                                                                                      aGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTc                                                >  2:621434/1‑140 (MQ=255)

                                                                                        gCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTg                                              >  1:227708/1‑140 (MQ=255)

                                                                                        gCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTACATCTCGCTAAACCAGGTATCCAGTTTATg                                              >  2:771226/1‑140 (MQ=255)

                                                                                          cAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGt                                                   <  2:882612/133‑1 (MQ=255)

                                                                                          cAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGt                                                   >  1:882612/1‑133 (MQ=255)

                                                                                          cAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGcc                                            >  1:990902/1‑140 (MQ=255)

                                                                                             cGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCa                                         >  2:468246/1‑140 (MQ=255)

                                                                                             cGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCa                                         >  1:15636/1‑140 (MQ=255)

                                                                                                  gAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCg                                           <  2:1242815/133‑1 (MQ=255)

                                                                                                  gAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCg                                           >  1:1242815/1‑133 (MQ=255)

                                                                                                  gAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTg                                    >  2:1192618/1‑140 (MQ=255)

                                                                                                        tAATCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACg                              >  2:1148361/1‑140 (MQ=255)

                                                                                                         aaTCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGc                             <  2:267770/140‑1 (MQ=255)

                                                                                                         aaTCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGc                             <  2:15636/140‑1 (MQ=255)

                                                                                                          aTCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGcc                            >  2:950879/1‑140 (MQ=255)

                                                                                                          aTCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGcc                            >  2:423992/1‑140 (MQ=255)

                                                                                                          aTCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGcc                            >  1:1172320/1‑140 (MQ=255)

                                                                                                           tCTATTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCt                           <  1:984629/140‑1 (MQ=255)

                                                                                                              aTTGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGt                        >  1:314665/1‑140 (MQ=255)

                                                                                                               ttGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGtt                       >  1:1198508/1‑140 (MQ=255)

                                                                                                               ttGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGtt                       >  1:116175/1‑140 (MQ=255)

                                                                                                               ttGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGtt                       >  1:1086054/1‑140 (MQ=255)

                                                                                                               ttGAATTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGtt                       >  2:1207017/1‑140 (MQ=255)

                                                                                                                  aaTTTACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGTttct                    >  2:1097696/1‑140 (MQ=255)

                                                                                                                     ttACGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGTTTCTTCa                 <  2:1010826/140‑1 (MQ=255)

                                                                                                                       aCGGGCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGTTTCTTCAAc               >  2:1045333/1‑140 (MQ=255)

                                                                                                                         gggCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGTTTCTTCAACga             >  1:871754/1‑140 (MQ=255)

                                                                                                                         gggCCGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGTTTCTTCAACga             >  1:1196082/1‑140 (MQ=255)

                                                                                                                             cGGATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGTTTCTTCAACgaagaa         <  2:990902/140‑1 (MQ=255)

                                                                                                                              ggATACGCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGTTTCTTCAACGAAGaaa        <  2:906240/140‑1 (MQ=255)

                                                                                                                                    gCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGTTTCTTCAACGAAGAAAACGttt  <  2:227708/140‑1 (MQ=255)

                                                                                                                                    gCCACGTCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACACCTTGTTTCTTCAACGAAGAAAACGttt  <  2:636590/140‑1 (MQ=255)

TTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTCCTGCGTTTCTTCTACAGGCTGCATCTCGCTAAACCAGGTATCCAGTTTCTGCCGCAGCTTGTCCACGCCTTGTTTCTTCAACGAAGAAAACGTTT  >  NC_000913/4049968‑4050239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A