Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,328,984 C→T S617L (TCG→TTG)  crfC → clamp‑binding sister replication fork colocalization protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,328,9840CT100.0% 223.0 / NA 63S617L (TCG→TTG) crfCclamp‑binding sister replication fork colocalization protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (24/39);  total (24/39)

CCTGGGTTTCATTTTCCTGTTTTTCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGG  >  NC_000913/4328848‑4329118
                                                                                                                                        |                                                                                                                                      
ccTGGGTTTCATTTTCCTGTTTTTCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTtgcg                                                                                                                                     <  2:370198/140‑1 (MQ=255)
  tGGGTTTCATTTTCCTGTTTTTCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCt                                                                                                                                   >  2:458891/1‑140 (MQ=255)
    ggTTTCATTTTCCTGTTTTTCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTgg                                                                                                                                 <  2:1225913/140‑1 (MQ=255)
     gTTTCATTTTCCTGTTTTTCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGt                                                                                                                                <  2:475278/140‑1 (MQ=255)
        tCATTTTCCTGTTTTTCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGa                                                                                                                             <  2:34478/140‑1 (MQ=255)
          aTTTTCCTGTTTTTCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAAt                                                                                                                           <  1:1174069/140‑1 (MQ=255)
              tCCTGTTTTTCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGc                                                                                                                       >  2:1189589/1‑140 (MQ=255)
               ccTGTTTTTCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGcc                                                                                                                      <  2:479929/140‑1 (MQ=255)
               ccTGTTTTTCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGcc                                                                                                                      <  2:1181864/140‑1 (MQ=255)
               ccTGTTTTTCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGcc                                                                                                                      <  1:995065/140‑1 (MQ=255)
                          cGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGAc                                                                                                           >  1:775756/1‑140 (MQ=255)
                                  ttCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAAt                                                                                                   >  2:949246/1‑140 (MQ=255)
                                     cccACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGGCTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATgag                                                                                                <  1:610242/140‑1 (MQ=255)
                                         cTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAAt                                                                                            >  2:194932/1‑140 (MQ=255)
                                          ttCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATgag                                                                                                <  2:1040343/135‑1 (MQ=255)
                                          ttCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATgag                                                                                                >  1:1040343/1‑135 (MQ=255)
                                            cAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCAc                                                                                         >  1:643323/1‑140 (MQ=255)
                                               cacTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGa                                                                                      >  1:134948/1‑140 (MQ=255)
                                               cacTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGa                                                                                      >  2:1045971/1‑140 (MQ=255)
                                                    gCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGaa                                                                                 >  1:698147/1‑140 (MQ=255)
                                                     ccAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGaaa                                                                                <  1:1045971/140‑1 (MQ=255)
                                                     ccAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGaaa                                                                                <  1:943363/140‑1 (MQ=255)
                                                     ccAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGaaa                                                                                <  1:770522/140‑1 (MQ=255)
                                                       aGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGGCTTTTTTGCGCTGGTTGAATCAGCCCGGCTGGGGACGGGGAAATGAGAAATCACCGACAGAAACg                                                                              <  2:344417/140‑1 (MQ=255)
                                                         cTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGt                                                                            <  1:280767/140‑1 (MQ=255)
                                                                gTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTAc                                                                     >  2:1131447/1‑140 (MQ=255)
                                                                 tGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACa                                                                    <  1:1103933/140‑1 (MQ=255)
                                                                 tGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACa                                                                    <  1:883843/140‑1 (MQ=255)
                                                                 tGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACa                                                                    <  2:643323/140‑1 (MQ=255)
                                                                 tGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACa                                                                    <  2:199932/140‑1 (MQ=255)
                                                                   aaGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAgt                                                                  >  1:1220216/1‑140 (MQ=255)
                                                                      tCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAgtgtg                                                               >  2:736794/1‑140 (MQ=255)
                                                                      tCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAgtgtg                                                               >  1:691564/1‑140 (MQ=255)
                                                                            cgcgCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCaa                                                         <  2:905192/140‑1 (MQ=255)
                                                                              cgcCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACg                                                       >  2:838487/1‑140 (MQ=255)
                                                                               gcCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGa                                                      >  2:902567/1‑140 (MQ=255)
                                                                                         aaCGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAgcg                                            <  1:736794/140‑1 (MQ=255)
                                                                                         aaCGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAgcg                                            <  1:1131447/140‑1 (MQ=255)
                                                                                          aCGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAgcgc                                           <  1:902567/140‑1 (MQ=255)
                                                                                            ggtcGAGCAGAGCGCGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAg                                         <  2:176041/137‑1 (MQ=255)
                                                                                            ggACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAg                                         <  2:823636/140‑1 (MQ=255)
                                                                                            ggACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAg                                         <  1:857354/140‑1 (MQ=255)
                                                                                             gACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGa                                        >  2:381535/1‑140 (MQ=255)
                                                                                               cGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAg                                      >  2:708559/1‑140 (MQ=255)
                                                                                               cGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAg                                      <  1:1182541/140‑1 (MQ=255)
                                                                                                gagcagagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAGCGAGCATTAAGCGCAGAAGt                                     >  1:755593/1‑140 (MQ=255)
                                                                                                 agcagagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTc                                    >  2:854813/1‑140 (MQ=255)
                                                                                                 agcagagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTc                                    <  2:134948/140‑1 (MQ=255)
                                                                                                   cagagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGa                                  <  2:534404/140‑1 (MQ=255)
                                                                                                    agagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAt                                 <  1:1189589/140‑1 (MQ=255)
                                                                                                    agagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAt                                 <  2:152457/140‑1 (MQ=255)
                                                                                                      agcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAtct                               >  1:1131659/1‑140 (MQ=255)
                                                                                                        caCGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATctct                             >  2:627280/1‑140 (MQ=255)
                                                                                                         aCGCGTTTAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTa                            <  1:854813/140‑1 (MQ=255)
                                                                                                              tttAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGcc                       <  1:642877/140‑1 (MQ=255)
                                                                                                              tttAGGCGTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGcc                       <  1:375144/140‑1 (MQ=255)
                                                                                                               ttAGGCGTTGTGCGTGAGGCTTTTTTGCACTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCca                      <  1:611118/140‑1 (MQ=255)
                                                                                                                     gTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTa                            <  2:1202417/128‑1 (MQ=255)
                                                                                                                     gTTGTGCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTa                            >  1:1202417/1‑128 (MQ=255)
                                                                                                                         tgCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCt            <  2:1131659/140‑1 (MQ=255)
                                                                                                                         tgCGTGAGACTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCt            >  2:894603/1‑140 (MQ=255)
                                                                                                                              gagaCTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGt       <  1:458891/140‑1 (MQ=255)
                                                                                                                              gagaCTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGt       <  1:838487/140‑1 (MQ=255)
                                                                                                                              gagaCTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGt       <  1:748342/140‑1 (MQ=255)
                                                                                                                                  cTTTTTTGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTg   <  2:282152/140‑1 (MQ=255)
                                                                                                                                   ttttttGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTgg  >  1:613226/1‑140 (MQ=255)
                                                                                                                                   ttttttGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTgg  <  2:276729/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                      
CCTGGGTTTCATTTTCCTGTTTTTCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGG  >  NC_000913/4328848‑4329118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A