Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,443,799 A→G D473G (GAC→GGC)  tamA → translocation and assembly module subunit TamA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,443,7990AG100.0% 260.2 / NA 74D473G (GAC→GGC) tamAtranslocation and assembly module subunit TamA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (32/42);  total (32/42)

GTTTTCCAGGCGCAGAACGTCTGGATCCGCACACTGTACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGACCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCGG  >  NC_000913/4443663‑4443933
                                                                                                                                        |                                                                                                                                      
gTTTTCCAGGCGCAGAACGTCTGGATCCGCACACTGTACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCg                                                                                                                                     <  1:978910/140‑1 (MQ=255)
  tttCCAGGCGCAGAACGTCTGGATCCGCACACTGTACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCa                                                                                                                                   <  2:615546/140‑1 (MQ=255)
    tCCAGGCGCAGAACGTCTGGATCCGCACACTGTACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGt                                                                                                                                 >  2:104885/1‑140 (MQ=255)
            cAGAACGTCTGGATCCGCACACTGTACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTgg                                                                                                                         >  2:268185/1‑140 (MQ=255)
             aGAACGTCTGGATCCGCACACTGTACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGc                                                                                                                        <  1:666496/140‑1 (MQ=255)
               aaCGTCTGGATCCGCACACTGTACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCta                                                                                                                      >  2:709975/1‑140 (MQ=255)
                   tCTGGATCCGCACACTGTACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGt                                                                                                                                 <  2:1141468/125‑1 (MQ=255)
                   tCTGGATCCGCACACTGTACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGt                                                                                                                                 >  1:1141468/1‑125 (MQ=255)
                    cTGGATCCGCACACTGTACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCtac                                                                                                                     <  2:977715/136‑1 (MQ=255)
                    cTGGATCCGCACACTGTACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCtac                                                                                                                     >  1:977715/1‑136 (MQ=255)
                                    tACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTcc                                                                                                 >  2:1132228/1‑140 (MQ=255)
                                    tACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTcc                                                                                                 >  1:220844/1‑140 (MQ=255)
                                    tACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTcc                                                                                                 >  1:997341/1‑140 (MQ=255)
                                      cGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGa                                                                                               <  1:31569/140‑1 (MQ=255)
                                        aTCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGaaa                                                                                             <  2:1134778/140‑1 (MQ=255)
                                            ccATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACg                                                                                         >  2:897319/1‑140 (MQ=255)
                                            ccATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACg                                                                                         >  1:949184/1‑140 (MQ=255)
                                            ccATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACg                                                                                         >  2:1084612/1‑140 (MQ=255)
                                            ccATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACg                                                                                         >  2:168247/1‑140 (MQ=255)
                                            ccATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACg                                                                                         >  1:386978/1‑140 (MQ=255)
                                            ccATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACg                                                                                         >  2:23682/1‑140 (MQ=255)
                                            ccATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACg                                                                                         >  1:549775/1‑140 (MQ=255)
                                              aTCGTTTTGTTACACGCGGCGCGCTGGGCTGGATAGAAACCGGTGATTTCGGCAAAGTACCGCCGGATCGGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATAcccc                                                                                       >  2:861358/1‑140 (MQ=255)
                                              aTCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGcc                                                                                       >  2:503884/1‑140 (MQ=255)
                                                cGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCaa                                                                                     >  2:1179814/1‑140 (MQ=255)
                                                  ttttGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACg                                                                                   <  2:949184/140‑1 (MQ=255)
                                                  ttttGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACg                                                                                   <  2:551661/140‑1 (MQ=255)
                                                   tttGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGT‑GCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGt                                                                                 <  1:198551/140‑1 (MQ=255)
                                                    ttGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGt                                                                                 <  1:1232477/140‑1 (MQ=255)
                                                      gTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGa                                                                               <  1:249844/140‑1 (MQ=255)
                                                       ttACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGAc                                                                              <  1:58767/140‑1 (MQ=255)
                                                       ttACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGAc                                                                              >  2:58767/1‑140 (MQ=255)
                                                            cgcgGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGaa                                                                         <  2:345619/140‑1 (MQ=255)
                                                               ggCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAgg                                                                      >  1:579861/1‑140 (MQ=255)
                                                               ggCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCC‑GGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAggg                                                                     >  1:1013861/1‑140 (MQ=255)
                                                               ggCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGACGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAgg                                                                      <  2:997341/140‑1 (MQ=255)
                                                                    gctgggctggATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCt                                                                 <  1:74666/140‑1 (MQ=255)
                                                                      tgggctggATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCg                                                               <  1:709975/140‑1 (MQ=255)
                                                                             gATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGa                                                        >  1:893027/1‑140 (MQ=255)
                                                                             gATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGa                                                        >  1:1066884/1‑140 (MQ=255)
                                                                              aTTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGAt                                                       >  1:413411/1‑140 (MQ=255)
                                                                                   aaCCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCg                                                  <  2:875301/140‑1 (MQ=255)
                                                                                    aCCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCgg                                                 >  2:787838/1‑140 (MQ=255)
                                                                                       ggTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCg                                                  <  1:986473/136‑1 (MQ=255)
                                                                                       ggTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCg                                                  >  2:986473/1‑136 (MQ=255)
                                                                                       ggTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATc                                              <  1:475602/140‑1 (MQ=255)
                                                                                        gTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCC‑GGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGc                                            <  2:1013861/140‑1 (MQ=255)
                                                                                            tttCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTgg                                         <  2:893027/140‑1 (MQ=255)
                                                                                            tttCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTgg                                         <  1:503884/140‑1 (MQ=255)
                                                                                             ttCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCACAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGAt                                               <  1:203558/133‑1 (MQ=255)
                                                                                             ttCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCACAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGAt                                               >  2:203558/1‑133 (MQ=255)
                                                                                              tCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGaa                                       <  2:220844/140‑1 (MQ=255)
                                                                                              tCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGaa                                       <  2:386978/140‑1 (MQ=255)
                                                                                              tCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGaa                                       <  1:714394/140‑1 (MQ=255)
                                                                                              tCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTAGCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGaa                                       <  2:476207/140‑1 (MQ=255)
                                                                                                gACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATa                                     <  1:912428/140‑1 (MQ=255)
                                                                                                 aCAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATAc                                    <  1:787838/140‑1 (MQ=255)
                                                                                                 aCAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATAc                                    <  2:1087031/140‑1 (MQ=255)
                                                                                                 aCAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATAc                                    <  1:271122/140‑1 (MQ=255)
                                                                                                  cAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACACCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATAcc                                   <  1:1132228/140‑1 (MQ=255)
                                                                                                       tACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTAc                              >  2:1244337/1‑140 (MQ=255)
                                                                                                            ccgGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGt                         >  1:409201/1‑140 (MQ=255)
                                                                                                            ccgGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGt                         <  1:23682/140‑1 (MQ=255)
                                                                                                            ccgGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGt                         <  2:711168/140‑1 (MQ=255)
                                                                                                            ccgGATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGt                         <  2:1066884/140‑1 (MQ=255)
                                                                                                               gATCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGAc                      >  1:190764/1‑140 (MQ=255)
                                                                                                                 tCTGCGTTTCTTCGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCg                    >  1:1064323/1‑140 (MQ=255)
                                                                                                                         tcttcGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAAtgg            >  1:168333/1‑140 (MQ=255)
                                                                                                                          cttcGCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCAAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAAtggt           <  2:822179/140‑1 (MQ=255)
                                                                                                                              gCCGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTgggg       <  2:579861/140‑1 (MQ=255)
                                                                                                                                cGGGGGCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGgcg     <  1:168247/140‑1 (MQ=255)
                                                                                                                                  ggggCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGcgcg   >  2:376068/1‑140 (MQ=255)
                                                                                                                                   gggCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCgg  <  1:1084612/140‑1 (MQ=255)
                                                                                                                                   gggCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCgg  <  1:104885/140‑1 (MQ=255)
                                                                                                                                   gggCGGCCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACCCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCgg  <  1:268185/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                      
GTTTTCCAGGCGCAGAACGTCTGGATCCGCACACTGTACGATCGCCATCGTTTTGTTACACGCGGCACGCTGGGCTGGATTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTCTTCGCCGGGGGCGACCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCGG  >  NC_000913/4443663‑4443933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A