Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,565,618	C→T	C78Y (TGC→TAC)	yjiM ←	putative dehydratase subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,565,618	0	C	T	100.0%	255.3 / NA	76	C78Y (TGC→TAC)	yjiM	putative dehydratase subunit
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (38/38); total (38/38)

GCTTAAACTCCGCCATGTATTCATACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGCAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGTGCAGTAAGTGCCAACCAGCGGA  >  NC_000913/4565484‑4565752

gCTTAAACTCCGCCATGTATTCATACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAgg                                                                                                                                   >  1:1005119/1‑140 (MQ=255)

gCTTAAACTCCGCCATGTATTCATACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAgg                                                                                                                                   >  2:774119/1‑140 (MQ=255)

     aaCTCCGCCATGTATTCATACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTgcg                                                                                                                              <  1:729547/140‑1 (MQ=255)

     aaCTCCGCCATGTATTCATACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTgcg                                                                                                                              <  1:23815/140‑1 (MQ=255)

      aCTCCGCCATGTATTCATACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTgcgc                                                                                                                             <  2:1155122/140‑1 (MQ=255)

          cGCCATGTATTCATACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCa                                                                                                                         >  2:489285/1‑140 (MQ=255)

          cGCCATGTATTCATACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCa                                                                                                                         >  1:394397/1‑140 (MQ=255)

          cGCCATGTATTCATACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCa                                                                                                                         >  2:732547/1‑140 (MQ=255)

            ccATGTATTCATACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGa                                                                                                                       <  2:18214/140‑1 (MQ=255)

            ccATGTATTCATACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGa                                                                                                                       <  2:394397/140‑1 (MQ=255)

                      aTACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCg                                                                                                             >  1:1030082/1‑140 (MQ=255)

                      aTACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCg                                                                                                             <  1:732547/140‑1 (MQ=255)

                       tACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGc                                                                                                            <  2:715036/140‑1 (MQ=255)

                        aCATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGct                                                                                                           <  2:1182062/140‑1 (MQ=255)

                         cATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGctt                                                                                                          >  2:633603/1‑140 (MQ=255)

                           ttttCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGcttct                                                                                                        >  1:1110511/1‑140 (MQ=255)

                           ttttCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGcttct                                                                                                        >  1:556776/1‑140 (MQ=255)

                            tttCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGcttctt                                                                                                       >  2:92786/1‑140 (MQ=255)

                            tttCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGcttctt                                                                                                       >  1:32145/1‑140 (MQ=255)

                              tCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCa                                                                                                     >  1:897206/1‑140 (MQ=255)

                               cTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCaa                                                                                                    <  1:272896/140‑1 (MQ=255)

                                tttttGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAAt                                                                                                   <  2:380195/140‑1 (MQ=255)

                                 ttttGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATg                                                                                                  <  2:1030082/140‑1 (MQ=255)

                                  tttGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATgg                                                                                                 >  1:607082/1‑140 (MQ=255)

                                   ttGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGt                                                                                                <  2:32145/140‑1 (MQ=255)

                                    tGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGtt                                                                                               <  2:914406/140‑1 (MQ=255)

                                    tGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGtt                                                                                               <  2:897206/140‑1 (MQ=255)

                                    tGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGtt                                                                                               >  1:1047304/1‑140 (MQ=255)

                                         tCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTtcatc                                                                                          <  2:1203941/140‑1 (MQ=255)

                                         tCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTtcatc                                                                                          <  2:581296/140‑1 (MQ=255)

                                          cGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTtcatca                                                                                         <  1:633603/140‑1 (MQ=255)

                                           gCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCag                                                                                        <  2:1018571/140‑1 (MQ=255)

                                           gCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCag                                                                                        <  1:422505/140‑1 (MQ=255)

                                                  gtTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGa                                                                                 >  2:859688/1‑140 (MQ=255)

                                                          gACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCg                                                                         >  1:309880/1‑140 (MQ=255)

                                                           accaccAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGa                                                                        >  1:930904/1‑140 (MQ=255)

                                                           accaccAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGa                                                                        >  1:987520/1‑140 (MQ=255)

                                                             caccaGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGaaa                                                                      >  1:1082409/1‑140 (MQ=255)

                                                             caccaGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGAGGAACAGAGCGaaa                                                                      >  1:683522/1‑140 (MQ=255)

                                                              accaGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAAc                                                                     <  1:896714/140‑1 (MQ=255)

                                                               ccaGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAAcc                                                                    >  1:1173485/1‑140 (MQ=255)

                                                                caGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGc                                                                          <  1:46276/133‑1 (MQ=255)

                                                                caGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGc                                                                          >  2:46276/1‑133 (MQ=255)

                                                                 aGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACcac                                                                  >  2:1000657/1‑140 (MQ=255)

                                                                        aaaaGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCa                                                           <  1:939903/140‑1 (MQ=255)

                                                                        aaaaGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCa                                                           <  1:489285/140‑1 (MQ=255)

                                                                             tagaagtagGGGCATTTATCGGTTTTGCCGAAGCCGTGGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGc                                                      <  1:23560/140‑1 (MQ=255)

                                                                             tagaagtagGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGc                                                      >  1:715060/1‑140 (MQ=255)

                                                                              agaagtagGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCt                                                     <  1:584319/140‑1 (MQ=255)

                                                                               gaagtagGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAAc                                                                     >  2:122027/1‑123 (MQ=255)

                                                                               gaagtagGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAAc                                                                     <  1:122027/123‑1 (MQ=255)

                                                                               gaagtagGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTg                                                    >  1:1178074/1‑140 (MQ=255)

                                                                                      gggCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCgg                                             >  1:603993/1‑140 (MQ=255)

                                                                                       ggCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACGACCGCACCgg                                                       <  1:442527/129‑1 (MQ=255)

                                                                                       ggCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCgg                                                       >  2:442527/1‑129 (MQ=255)

                                                                                       ggCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCggg                                            >  2:707973/1‑140 (MQ=255)

                                                                                       ggCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCggg                                            <  2:203460/140‑1 (MQ=255)

                                                                                       ggCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGCTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCggg                                            >  1:139717/1‑140 (MQ=255)

                                                                                         cATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGAt                                          <  2:231142/140‑1 (MQ=255)

                                                                                           tttATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTg                                                    >  2:1248433/1‑128 (MQ=255)

                                                                                           tttATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTg                                                    <  1:1248433/128‑1 (MQ=255)

                                                                                             tATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCa                                                 >  2:1157625/1‑129 (MQ=255)

                                                                                             tATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCa                                                 <  1:1157625/129‑1 (MQ=255)

                                                                                             tATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATctct                                      >  1:848221/1‑140 (MQ=255)

                                                                                             tATCGCTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATctct                                      <  2:1110511/140‑1 (MQ=255)

                                                                                               tCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTg                                    <  2:1173485/140‑1 (MQ=255)

                                                                                               tCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTg                                    <  2:556776/140‑1 (MQ=255)

                                                                                               tCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTg                                    <  2:1178074/140‑1 (MQ=255)

                                                                                                    tttGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCa                               >  2:428698/1‑140 (MQ=255)

                                                                                                    tttGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCa                               >  1:734856/1‑140 (MQ=255)

                                                                                                      tGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATa                             <  2:930904/140‑1 (MQ=255)

                                                                                                       gCCGAAGCCGTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATaa                            <  1:428698/140‑1 (MQ=255)

                                                                                                                gTAGCTGCTTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGTGCAGt                   <  1:1113030/140‑1 (MQ=255)

                                                                                                                       ctTTTAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGTGCAGTAAGTGcc            >  2:1061631/1‑140 (MQ=255)

                                                                                                                         tttAATCAGCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGTGCAGTAAGTGCCaa          >  2:290949/1‑140 (MQ=255)

                                                                                                                                 gCGGGTAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGTGCAGTAAGTGCCAACCAGCGGa  >  1:621464/1‑140 (MQ=255)

GCTTAAACTCCGCCATGTATTCATACATTTTCTTTTTGCCGTCGCAGGTGGTTTCACCGACCACCAGATCCGAAAAGTAGAAGTAGGGGCATTTATCGGTTTTGCCGAAGCCGTAGCTGCTTTTAATCAGCGGGCAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGTGCAGTAAGTGCCAACCAGCGGA  >  NC_000913/4565484‑4565752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A