Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F28 I1 R1 227 52.0 1764248 99.3% 1751898 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,369,224 C→T M85I (ATG→ATA)  yhcH ← DUF386 domain‑containing protein YhcH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,369,2240CT97.5% 271.3 / ‑2.2 80M85I (ATG→ATA) yhcHDUF386 domain‑containing protein YhcH
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base T (38/40);  total (39/41)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.66e-01

TTTATGCGGTTCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCCATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACATTCATAAAGATATTGTCGCC  >  NC_000913/3369089‑3369355
                                                                                                                                       |                                                                                                                                   
tttATGCGGTTCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCtgctatgc                                                                                                                                 >  1:232709/1‑140 (MQ=255)
    tGCGGTTCACCTGGCATAAACACGGCGTACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCaaa                                                                                                                             >  1:47514/1‑140 (MQ=255)
    tGCGGTTCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCaaa                                                                                                                             >  1:188965/1‑140 (MQ=255)
        gTTCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGa                                                                                                                         <  2:423598/140‑1 (MQ=255)
        gTTCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGa                                                                                                                         >  1:716486/1‑140 (MQ=255)
        gTTCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGa                                                                                                                         <  1:65122/140‑1 (MQ=255)
          tCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAAt                                                                                                                       >  2:467870/1‑140 (MQ=255)
          tCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAAt                                                                                                                       <  2:188965/140‑1 (MQ=255)
          tCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAAt                                                                                                                       <  2:716486/140‑1 (MQ=255)
            aCCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATcc                                                                                                                     >  2:138277/1‑140 (MQ=255)
                    tAAACACGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCa                                                                                                             <  2:236827/140‑1 (MQ=255)
                     aaaCACGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCAc                                                                                                            <  2:232709/140‑1 (MQ=255)
                      aaCACGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCAcc                                                                                                           >  2:94597/1‑140 (MQ=255)
                       acacGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGATATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCg                                                                                                          <  1:61117/140‑1 (MQ=255)
                           ggCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCCATGCCAAACAGAATCCGTTCCTCACCGTTta                                                                                                      >  2:877800/1‑140 (MQ=255)
                               aaCATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTtaataa                                                                                                  >  2:578611/1‑140 (MQ=255)
                               aaCATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTtaataa                                                                                                  <  2:849406/140‑1 (MQ=255)
                                  aTTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAg                                                                                               <  2:47514/140‑1 (MQ=255)
                                  aTTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCCATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAg                                                                                               <  1:877800/140‑1 (MQ=255)
                                      ccGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTtaat                                                                                                    >  2:653662/1‑131 (MQ=255)
                                      ccGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTtaat                                                                                                    <  1:653662/131‑1 (MQ=255)
                                       cGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGa                                                                                          <  2:567410/140‑1 (MQ=255)
                                       cGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGa                                                                                          <  2:250140/140‑1 (MQ=255)
                                       cGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGa                                                                                          <  2:284988/140‑1 (MQ=255)
                                       cGGTTCTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGa                                                                                          <  2:604026/140‑1 (MQ=255)
                                        ggTTTTAAGATGATGGCTTGCTCGTTAT‑AATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGata                                                                                        <  1:408323/140‑1 (MQ=255)
                                         gTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGata                                                                                        <  1:467870/140‑1 (MQ=255)
                                          ttttAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGatat                                                                                       <  1:308843/140‑1 (MQ=255)
                                            ttAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCa                                                                                     <  1:456567/140‑1 (MQ=255)
                                            ttAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCa                                                                                     <  1:814569/140‑1 (MQ=255)
                                                    atgGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTg                                                                             >  2:751394/1‑140 (MQ=255)
                                                         ttGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGt                                                                        >  2:695804/1‑140 (MQ=255)
                                                                      aTGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCttt                                                           >  1:468420/1‑140 (MQ=255)
                                                                       tGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCtttt                                                          <  2:452332/140‑1 (MQ=255)
                                                                       tGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCtttt                                                          >  1:28339/1‑140 (MQ=255)
                                                                          tgctgcAAAGCTGATAATCATCCTTATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTtc                                                       >  2:380214/1‑140 (MQ=255)
                                                                           gctgcAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTtct                                                      >  2:878083/1‑140 (MQ=255)
                                                                           gctgcAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTtct                                                      >  2:705437/1‑140 (MQ=255)
                                                                            ctgcAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTtctc                                                     >  2:811563/1‑140 (MQ=255)
                                                                            ctgcAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTtctc                                                     >  2:123451/1‑140 (MQ=255)
                                                                             tgcAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCg                                                    >  1:414059/1‑140 (MQ=255)
                                                                             tgcAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTCTTCTCg                                                    >  2:233264/1‑140 (MQ=255)
                                                                               cAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGAc                                                  <  2:414059/140‑1 (MQ=255)
                                                                               cAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGAc                                                  >  1:724876/1‑140 (MQ=255)
                                                                               cAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGAc                                                  >  1:180213/1‑140 (MQ=255)
                                                                                  aGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACggg                                               >  1:286631/1‑140 (MQ=255)
                                                                                       aTAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGAtt                                          <  2:734789/140‑1 (MQ=255)
                                                                                        tAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTg                                         <  2:50421/140‑1 (MQ=255)
                                                                                         aaTCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGa                                        <  1:561654/140‑1 (MQ=255)
                                                                                             atcCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAgtgt                                    >  2:619687/1‑140 (MQ=255)
                                                                                              tcCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGtt                                   >  2:796315/1‑140 (MQ=255)
                                                                                                 tCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTaaa                                <  1:811563/140‑1 (MQ=255)
                                                                                                  cATGGTGGGACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAAc                               >  1:291419/1‑140 (MQ=255)
                                                                                                     ggtggAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTa                                  <  1:870214/134‑1 (MQ=255)
                                                                                                     ggtggAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTa                                  >  2:870214/1‑134 (MQ=255)
                                                                                                         gAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGa                        >  1:821801/1‑140 (MQ=255)
                                                                                                         gAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGa                        >  2:630344/1‑140 (MQ=255)
                                                                                                         gAACTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCAGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGa                        >  2:227945/1‑140 (MQ=255)
                                                                                                          aaCTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGAc                       <  1:138277/140‑1 (MQ=255)
                                                                                                          aaCTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGAc                       <  1:380214/140‑1 (MQ=255)
                                                                                                           aCTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACa                      <  1:123451/140‑1 (MQ=255)
                                                                                                           aCTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACa                      <  1:578611/140‑1 (MQ=255)
                                                                                                           aCTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACa                      <  2:189172/140‑1 (MQ=255)
                                                                                                           aCTCTTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACa                      <  2:286631/140‑1 (MQ=255)
                                                                                                             tctTCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACAtt                    <  1:630344/140‑1 (MQ=255)
                                                                                                               ttCACACTGACGCGCAGTGCCTGCTATGCTAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTaa                                 >  1:150226/1‑125 (MQ=255)
                                                                                                               ttCACACTGACGCGCAGTGCCTGCTATGCTAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTaa                                 <  2:150226/125‑1 (MQ=255)
                                                                                                               ttCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACa                      >  2:326963/1‑136 (MQ=255)
                                                                                                               ttCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACa                      <  1:326963/136‑1 (MQ=255)
                                                                                                               ttCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACATTCa                  >  1:772797/1‑140 (MQ=255)
                                                                                                               ttCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACATTCa                  >  1:752057/1‑140 (MQ=255)
                                                                                                                tCACACTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACATTCAt                 <  1:94597/140‑1 (MQ=255)
                                                                                                                 cacaCTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACATTCATa                >  1:44068/1‑140 (MQ=255)
                                                                                                                    acTGACGCGCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACATTCATAAAg             >  1:450434/1‑140 (MQ=255)
                                                                                                                         cgcgCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACATTCATAAAGATAtt        >  1:273107/1‑140 (MQ=255)
                                                                                                                         cgcgCAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACATTCATAAAGATAtt        >  1:869633/1‑140 (MQ=255)
                                                                                                                           cgcAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACATTCATAAAGATATTGt      <  1:705437/140‑1 (MQ=255)
                                                                                                                           cgcAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACATTCATAAAGATATTGt      >  1:466315/1‑140 (MQ=255)
                                                                                                                           cgcAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACATTCATAAAGATATTGt      <  1:878083/140‑1 (MQ=255)
                                                                                                                             cAGTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACATTCATAAAGATATTGTCg    <  2:468420/140‑1 (MQ=255)
                                                                                                                               gTGCCTGCTATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACATTCATAAAGATATTGTCGcc  <  2:273107/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                   
TTTATGCGGTTCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGATGATGGCTTGCTCGTTATCAATGGTGCTGCAAAGCTGATAATCATCCTCATGGTGGAACTCTTCACACTGACGCGCAGTGCCTGCCATGCCAAACAGAATCCGTTCCTCACCGTTTAATAACAGCTGGATATCAATGTATTGCTCGTGCAATTCCGCTTTTTTCTCGACGGGCGATTGAGTGTTAAACGTCATGACATTCATAAAGATATTGTCGCC  >  NC_000913/3369089‑3369355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A