Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F28 I1 R1 227 52.0 1764248 99.3% 1751898 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,795,662 A→G N245S (AAC→AGC)  waaF → ADP‑heptose‑‑LPS heptosyltransferase 2

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,795,6620AG100.0% 300.4 / NA 83N245S (AAC→AGC) waaFADP‑heptose‑‑LPS heptosyltransferase 2
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (43/40);  total (43/40)

CTACCACTATGCGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAACCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGT  >  NC_000913/3795525‑3795792
                                                                                                                                         |                                                                                                                                  
cTACCACTATGCGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAA‑ACCGAGCAGCAGGCATGGTGTCGGAGCCt                                                                                                                                 >  2:870506/1‑140 (MQ=255)
    cACTATGCGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGc                                                                                                                              >  1:382829/1‑140 (MQ=255)
    cACTATGCGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGc                                                                                                                              >  2:320614/1‑140 (MQ=255)
       tATGCGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCggg                                                                                                                           <  1:628278/140‑1 (MQ=255)
        aTGCGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCgggg                                                                                                                          <  1:320614/140‑1 (MQ=255)
         tGCGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCggggg                                                                                                                         >  1:251924/1‑140 (MQ=255)
         tGCGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCggggg                                                                                                                         >  2:213594/1‑140 (MQ=255)
         tGCGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCggggg                                                                                                                         >  2:314968/1‑140 (MQ=255)
         tGCGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCggggg                                                                                                                         >  2:327788/1‑140 (MQ=255)
         tGCGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCggggg                                                                                                                         >  2:753414/1‑140 (MQ=255)
           cGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGGAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGaa                                                                                                                       >  2:163736/1‑140 (MQ=255)
           cGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGaa                                                                                                                       >  1:255528/1‑140 (MQ=255)
           cGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGaa                                                                                                                       >  2:794967/1‑140 (MQ=255)
            ggAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGaaa                                                                                                                      <  2:272569/140‑1 (MQ=255)
            ggAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGaaa                                                                                                                      <  1:827098/140‑1 (MQ=255)
             gAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAac                                                                                                                     >  1:399996/1‑140 (MQ=255)
              aGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAaca                                                                                                                    >  2:249212/1‑140 (MQ=255)
                cTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAAcaca                                                                                                                  >  1:163735/1‑140 (MQ=255)
                cTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAAcaca                                                                                                                  >  1:713287/1‑140 (MQ=255)
                 tGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAg                                                                                                                 >  1:116703/1‑140 (MQ=255)
                        gcagcTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAA‑ACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCa                                                                                                         <  1:870506/140‑1 (MQ=255)
                         cagcTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCa                                                                                                         <  2:399996/140‑1 (MQ=255)
                           gcTGATTGATGAAGGTTATCAGGTGGTTCCGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAg                                                                                                       <  2:664235/140‑1 (MQ=255)
                             tgattgatGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCTGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCg                                                                                                     >  1:480579/1‑140 (MQ=255)
                             tgattgatGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCg                                                                                                     >  1:208204/1‑140 (MQ=255)
                             tgattgatGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCg                                                                                                     >  2:784338/1‑140 (MQ=255)
                              gattgatGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCgg                                                                                                    <  2:163735/140‑1 (MQ=255)
                                ttgatGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGtt                                                                                                  <  2:116703/140‑1 (MQ=255)
                                  gatgaAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTAt                                                                                                <  1:794967/140‑1 (MQ=255)
                                    tgaAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATcc                                                                                              <  2:1357/140‑1 (MQ=255)
                                            aTCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCa                                                                                      <  1:543933/140‑1 (MQ=255)
                                            aTCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCa                                                                                      <  2:26300/140‑1 (MQ=255)
                                             tCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAg                                                                                     <  2:713287/140‑1 (MQ=255)
                                                  tggtTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGt                                                                                <  1:249212/140‑1 (MQ=255)
                                                  tggtTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGt                                                                                >  1:728948/1‑140 (MQ=255)
                                                    gtTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTaa                                                                              >  1:521011/1‑140 (MQ=255)
                                                     ttCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTaaa                                                                             >  1:148333/1‑140 (MQ=255)
                                                      tCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAg                                                                            <  2:208204/140‑1 (MQ=255)
                                                      tCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAg                                                                            >  1:35012/1‑140 (MQ=255)
                                                           ttGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCAtt                                                                       <  2:480579/140‑1 (MQ=255)
                                                              gCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTc                                                                    <  2:35012/140‑1 (MQ=255)
                                                               cTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCa                                                                         >  1:448631/1‑134 (MQ=255)
                                                               cTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCa                                                                         <  2:448631/134‑1 (MQ=255)
                                                               cTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCa                                                                   <  2:251924/140‑1 (MQ=255)
                                                               cTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCa                                                                   >  2:368368/1‑140 (MQ=255)
                                                               cTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCa                                                                   >  1:407547/1‑140 (MQ=255)
                                                               cTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCa                                                                   >  1:110754/1‑140 (MQ=255)
                                                                  ggCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTa                                                                >  1:103621/1‑140 (MQ=255)
                                                                   gCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTaa                                                               <  1:784338/140‑1 (MQ=255)
                                                                    cGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAAc                                                              <  2:528565/140‑1 (MQ=255)
                                                                             aTGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGc                                                     <  1:327788/140‑1 (MQ=255)
                                                                             aTGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGc                                                     <  1:314968/140‑1 (MQ=255)
                                                                                     ggCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCa                                             >  1:710184/1‑140 (MQ=255)
                                                                                     ggCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCa                                             >  1:871100/1‑140 (MQ=255)
                                                                                     ggCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCa                                             >  1:537171/1‑140 (MQ=255)
                                                                                     ggCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCa                                             >  1:213753/1‑140 (MQ=255)
                                                                                     ggCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCa                                             >  1:589230/1‑140 (MQ=255)
                                                                                     ggCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCa                                             >  2:360866/1‑140 (MQ=255)
                                                                                             gaTTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTgcgg                                     >  1:830219/1‑140 (MQ=255)
                                                                                               ttCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTgcggcg                                   <  2:521011/140‑1 (MQ=255)
                                                                                                tCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTgcggcgg                                  >  1:178396/1‑140 (MQ=255)
                                                                                                  ttGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTgcggcggcg                                <  2:710184/140‑1 (MQ=255)
                                                                                                  ttGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTgcggcggcg                                <  2:830219/140‑1 (MQ=255)
                                                                                                  ttGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTgcggcggcg                                <  2:213753/140‑1 (MQ=255)
                                                                                                      cGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCa                            <  1:753414/140‑1 (MQ=255)
                                                                                                            gAATACCGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGGTGCATGTTGCGGCGGCGCTCAATCGTc                      <  2:407547/140‑1 (MQ=255)
                                                                                                                  cGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTgg                <  2:784537/140‑1 (MQ=255)
                                                                                                                  cGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTgg                <  2:148333/140‑1 (MQ=255)
                                                                                                                  cGAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTgg                <  2:110754/140‑1 (MQ=255)
                                                                                                                   gAGCAGCAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGt               >  1:542639/1‑140 (MQ=255)
                                                                                                                    agcagcAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTcc                     <  2:381705/133‑1 (MQ=255)
                                                                                                                    agcagcAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTcc                     >  1:381705/1‑133 (MQ=255)
                                                                                                                    agcagcAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGtt              >  1:648160/1‑140 (MQ=255)
                                                                                                                    agcagcAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGtt              <  2:335638/140‑1 (MQ=255)
                                                                                                                    agcagcAGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCACTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGtt              >  1:391396/1‑140 (MQ=255)
                                                                                                                     gcagcaGGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGTTCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTg             >  1:556242/1‑140 (MQ=255)
                                                                                                                       agcagGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGcc           >  2:458322/1‑140 (MQ=255)
                                                                                                                       agcagGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGcc           <  1:213594/140‑1 (MQ=255)
                                                                                                                       agcagGCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCACTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGcc           <  2:391396/140‑1 (MQ=255)
                                                                                                                           ggCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGt       <  2:382829/140‑1 (MQ=255)
                                                                                                                           ggCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGt       <  1:491858/140‑1 (MQ=255)
                                                                                                                            gCATGGTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTa      >  2:514840/1‑140 (MQ=255)
                                                                                                                                ggTGTCGGAGCCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGt  <  1:360866/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                  
CTACCACTATGCGGAGCTGGCAAAGCAGCTGATTGATGAAGGTTATCAGGTGGTTCTGTTTGGCTCGGCGAAAGATCATGAAGCGGGCAATGAGATTCTTGCCGCTTTGAATACCGAGCAGCAGGCATGGTGTCGGAACCTGGCGGGGGAAACACAGCTTGATCAAGCGGTTATCCTGATTGCAGCCTGTAAAGCCATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGT  >  NC_000913/3795525‑3795792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A