Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F73 I1 R1 26 65.3 2245954 99.3% 2230232 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,110,455 G→T E176* (GAA→TAA)  cdh → CDP‑diacylglycerol diphosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,110,4550GT96.9% 216.1 / ‑0.7 65E176* (GAA→TAA) cdhCDP‑diacylglycerol diphosphatase
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base T (31/32);  total (32/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

CACCGGGCGTACGCAAAACCATTTTCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTC  >  NC_000913/4110322‑4110591
                                                                                                                                     |                                                                                                                                        
cACCGGGCGTACGCAAAACCATTTTCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATAcc                                                                                                                                    >  1:827917/1‑140 (MQ=255)
     ggCGTACGCAAAACCATTTTCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGgcg                                                                                                                               >  2:748700/1‑140 (MQ=255)
     ggCGTACGCAAAACCATTTTCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGgcg                                                                                                                               >  2:515016/1‑140 (MQ=255)
     ggCGTACGCAAAACCATTTTCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGgcg                                                                                                                               >  2:831752/1‑140 (MQ=255)
       cGTACGCAAAACCATTTTCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGcgcg                                                                                                                             <  1:748620/140‑1 (MQ=255)
        gTACGCAAAACCATTTTCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGt                                                                                                                            <  2:448650/140‑1 (MQ=255)
                aaCCATTTTCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAAc                                                                                                                    >  1:31964/1‑140 (MQ=255)
                      tttCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAg                                                                                                              <  2:827917/140‑1 (MQ=255)
                      tttCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAg                                                                                                              >  1:828557/1‑140 (MQ=255)
                      tttCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAg                                                                                                              <  1:831752/140‑1 (MQ=255)
                          atattcatatCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGaa                                                                                                          >  2:677223/1‑140 (MQ=255)
                           tattcatatCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAAc                                                                                                         <  1:615703/140‑1 (MQ=255)
                                atatCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTa                                                                                                    <  2:269554/140‑1 (MQ=255)
                                  atCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACa                                                                                                  >  1:451806/1‑140 (MQ=255)
                                        tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACg                                                                                               <  1:435129/137‑1 (MQ=255)
                                        tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACg                                                                                               >  2:435129/1‑137 (MQ=255)
                                        tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAg                                                                                            >  2:273055/1‑140 (MQ=255)
                                        tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAg                                                                                            >  2:253135/1‑140 (MQ=255)
                                        tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAg                                                                                            >  2:836532/1‑140 (MQ=255)
                                        tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAg                                                                                            >  1:1027362/1‑140 (MQ=255)
                                        tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAg                                                                                            <  2:31964/140‑1 (MQ=255)
                                        tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAg                                                                                            >  2:986448/1‑140 (MQ=255)
                                        tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAg                                                                                            <  1:20916/140‑1 (MQ=255)
                                        tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAg                                                                                            <  1:515016/140‑1 (MQ=255)
                                          tATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGcc                                                                                          >  2:447427/1‑140 (MQ=255)
                                          tATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGcc                                                                                          >  2:49623/1‑140 (MQ=255)
                                            ttCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCa                                                                                        >  2:924046/1‑140 (MQ=255)
                                               gTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCAttt                                                                                     >  1:818302/1‑140 (MQ=255)
                                               gTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCAttt                                                                                     >  2:720302/1‑140 (MQ=255)
                                               gTCCTGATGTGCGCAAACAGCTGGATAACAATATGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCAttt                                                                                     >  2:587101/1‑140 (MQ=255)
                                                 ccTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTat                                                                                   >  1:743575/1‑140 (MQ=255)
                                                     aTGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTatgatg                                                                               <  1:748700/140‑1 (MQ=255)
                                                     aTGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTatgatg                                                                               <  1:938906/140‑1 (MQ=255)
                                                       gtgCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCt                                                                             >  2:1084882/1‑140 (MQ=255)
                                                       gtgCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCt                                                                             <  1:673103/140‑1 (MQ=255)
                                                          cgcAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGc                                                                          >  1:94842/1‑140 (MQ=255)
                                                          cgcAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGc                                                                          >  1:394601/1‑140 (MQ=255)
                                                          cgcAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGc                                                                          <  1:924046/140‑1 (MQ=255)
                                                           gcAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCa                                                                         <  2:394601/140‑1 (MQ=255)
                                                            cAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCag                                                                        <  1:253135/140‑1 (MQ=255)
                                                             aaaCAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCaga                                                                       <  2:1027362/140‑1 (MQ=255)
                                                               aCAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCagaag                                                                     >  1:349316/1‑140 (MQ=255)
                                                               aCAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCagaag                                                                     >  1:400091/1‑140 (MQ=255)
                                                                cAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCagaaga                                                                    <  2:1091790/140‑1 (MQ=255)
                                                                   cTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGt                                                                 >  1:503125/1‑140 (MQ=255)
                                                                       aTAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCagaaga                                                                    >  2:609484/1‑133 (MQ=255)
                                                                       aTAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCagaaga                                                                    <  1:609484/133‑1 (MQ=255)
                                                                             aTCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGgcg                                                       <  1:447427/140‑1 (MQ=255)
                                                                             aTCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGgcg                                                       <  1:720302/140‑1 (MQ=255)
                                                                                tGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCgg                                                    <  2:491567/140‑1 (MQ=255)
                                                                                 ggCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCggg                                                   <  1:889112/140‑1 (MQ=255)
                                                                                 ggCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCggg                                                   >  2:889112/1‑140 (MQ=255)
                                                                                  gCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGa                                                  >  1:988952/1‑140 (MQ=255)
                                                                                  gCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGa                                                  >  1:554009/1‑140 (MQ=255)
                                                                                            gcagcCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGa                                        >  1:56745/1‑140 (MQ=255)
                                                                                            gcagcCGCTGGGGGCCACTGCCATGTGGTTTGCGCGGGCAATAATACCTGGCGCGTCGGGGAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGa                                        <  2:56745/140‑1 (MQ=255)
                                                                                              agcCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACg                                      <  1:391291/140‑1 (MQ=255)
                                                                                                 cGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTa                                   <  1:961773/140‑1 (MQ=255)
                                                                                                          ccACTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGc                          <  1:1084882/140‑1 (MQ=255)
                                                                                                            aCTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGa                        <  2:818302/140‑1 (MQ=255)
                                                                                                            aCTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGa                        <  2:793130/140‑1 (MQ=255)
                                                                                                            aCTGCCAGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGa                        <  2:1015593/140‑1 (MQ=255)
                                                                                                                  aGGTGGTTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTAc                  <  1:986448/140‑1 (MQ=255)
                                                                                                                      ggtTTGCGCGGGCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCa              <  1:49623/140‑1 (MQ=255)
                                                                                                                               gggCATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATaa     <  1:836532/140‑1 (MQ=255)
                                                                                                                                  cATTAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTc  <  2:828557/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                        
CACCGGGCGTACGCAAAACCATTTTCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTC  >  NC_000913/4110322‑4110591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A