Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F73 I1 R1	37	152.5	5346736	99.2%	5303962	139.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,636,973	G→T	N146K (AAC→AAA)	yhiN ←	putative oxidoreductase YhiN

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,636,973	0	G	T	97.5%	413.6 / 3.3	120	N146K (AAC→AAA)	yhiN	putative oxidoreductase YhiN
Reads supporting (aligned to +/- strand): ref base G (1/2); new base T (56/61); total (57/63)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01

Only 100 of 126 total aligned reads displayed.

ACCAGACCCGCGCGGGTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑GTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATCTGCTGCGCGGAGTCATCGCAGA  >  NC_000913/3636836‑3637106

aCCAGACCCGCGCGGGTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑ttt                                                                                                                                     >  2:717916/1‑140 (MQ=255)

  cAGACCCGCGCGGGTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTGTAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCa                                                                                                                                   >  1:2412895/1‑140 (MQ=255)

  cAGACCCGCGCGGGTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCa                                                                                                                                   >  2:1885972/1‑140 (MQ=255)

    gACCCGCGCGGGTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGa                                                                                                                                 >  2:1856364/1‑140 (MQ=255)

      cccGCGCGGGTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATc                                                                                                                               <  1:685731/140‑1 (MQ=255)

       ccGCGCGGGTCGGCAGCACGTTGAGGCCAAGTTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCa                                                                                                                              <  1:2094597/140‑1 (MQ=255)

         gcgcgGGTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAg                                                                                                                            >  1:2318572/1‑140 (MQ=255)

         gcgcgGGTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAg                                                                                                                            >  1:1704740/1‑140 (MQ=255)

         gcgcgGGTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAg                                                                                                                            >  1:167369/1‑140 (MQ=255)

          cgcgGGTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGc                                                                                                                           >  2:473365/1‑140 (MQ=255)

          cgcgGGTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGc                                                                                                                           >  1:2435541/1‑140 (MQ=255)

          cgcgGGTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGc                                                                                                                           >  2:905884/1‑140 (MQ=255)

          cgcgGGTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGc                                                                                                                           >  1:2059036/1‑140 (MQ=255)

               gTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGaa                                                                                                                      >  2:252242/1‑140 (MQ=255)

                tCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAg                                                                                                                     <  1:10227/140‑1 (MQ=255)

                tCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑GTTCAGATCAAGCGTGAAg                                                                                                                     <  1:1872433/140‑1 (MQ=255)

                 cGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGc                                                                                                                    <  2:242712/140‑1 (MQ=255)

                 cGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGc                                                                                                                    <  2:707068/140‑1 (MQ=255)

                 cGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGc                                                                                                                    <  1:1325498/140‑1 (MQ=255)

                   gcagcaCGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCt                                                                                                                  <  2:1704740/140‑1 (MQ=255)

                   gcagcaCGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCt                                                                                                                  <  2:342127/140‑1 (MQ=255)

                         cGTTGAGGGCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACTGGCCTCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCATGAAGCCTGTTACa                                                                                                            >  2:2205428/1‑140 (MQ=255)

                         cGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCa                                                                                                            >  1:2019873/1‑140 (MQ=255)

                         cGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCa                                                                                                            >  1:1406136/1‑140 (MQ=255)

                           ttGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATc                                                                                                          <  1:1705157/140‑1 (MQ=255)

                           ttGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATc                                                                                                          <  1:558666/140‑1 (MQ=255)

                           ttGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATc                                                                                                          <  2:1665009/140‑1 (MQ=255)

                            tGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATcc                                                                                                         >  1:816909/1‑140 (MQ=255)

                             gAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCt                                                                                                        <  2:1934641/140‑1 (MQ=255)

                             gAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCt                                                                                                        <  1:1274609/140‑1 (MQ=255)

                                gCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCg                                                                                                     <  2:1482263/140‑1 (MQ=255)

                                 ccAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGc                                                                                                    >  2:399919/1‑140 (MQ=255)

                                  cAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGcc                                                                                                   <  1:2067928/140‑1 (MQ=255)

                                    aaTTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCcac                                                                                                 >  2:401578/1‑140 (MQ=255)

                                            ggCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCa                                                                                         <  1:401578/140‑1 (MQ=255)

                                            ggCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCa                                                                                         <  1:1251774/140‑1 (MQ=255)

                                            ggCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCa                                                                                         <  1:2578634/140‑1 (MQ=255)

                                                      taACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACg                                                                               <  1:761071/140‑1 (MQ=255)

                                                        aCCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCa                                                                             <  2:2059036/140‑1 (MQ=255)

                                                        aCCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCa                                                                             >  2:1564626/1‑140 (MQ=255)

                                                        aCCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCa                                                                             >  1:1345066/1‑140 (MQ=255)

                                                        aCCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATC‑AGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCaa                                                                            >  2:2170180/1‑140 (MQ=255)

                                                          cAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAAt                                                                           <  1:1093277/140‑1 (MQ=255)

                                                          cAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAAt                                                                           <  1:1047180/140‑1 (MQ=255)

                                                            agcGGCGACGCGCTCAGCTCCGTCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCATCCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCt                                                                         <  2:723498/138‑1 (MQ=255)

                                                            aaCGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCGTGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCt                                                                         >  1:2439830/1‑140 (MQ=255)

                                                            aaCGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCt                                                                         >  1:2356830/1‑140 (MQ=255)

                                                            aaCGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCt                                                                         <  2:2656604/140‑1 (MQ=255)

                                                             aCGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTg                                                                        >  2:1393540/1‑140 (MQ=255)

                                                             aCGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTg                                                                        <  2:1355596/140‑1 (MQ=255)

                                                             aCGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTg                                                                        >  2:1138440/1‑140 (MQ=255)

                                                             aCGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTg                                                                        >  2:938147/1‑140 (MQ=255)

                                                                 cGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAgg                                                                    >  1:2243494/1‑140 (MQ=255)

                                                                        cccAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACAtt                                                             >  2:1381962/1‑140 (MQ=255)

                                                                         ccAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTg                                                            <  2:1680691/140‑1 (MQ=255)

                                                                          cAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCCTTTCAGATCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTcac                                                                <  1:2611557/140‑1 (MQ=255)

                                                                                 ggCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTtctc                                                    >  1:751770/1‑140 (MQ=255)

                                                                                 ggCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTtctc                                                    >  1:1437188/1‑140 (MQ=255)

                                                                                  gCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCg                                                   <  2:1152250/140‑1 (MQ=255)

                                                                                   cATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGc                                                  <  1:1564626/140‑1 (MQ=255)

                                                                                    aTTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCa                                                 <  1:252242/140‑1 (MQ=255)

                                                                                      tGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACt                                               <  1:1945779/140‑1 (MQ=255)

                                                                                       gACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTc                                              >  1:1871718/1‑140 (MQ=255)

                                                                                       gACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTc                                              >  2:1534479/1‑140 (MQ=255)

                                                                                       gACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTc                                              >  2:1948359/1‑140 (MQ=255)

                                                                                        aCAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCa                                             <  2:1250547/140‑1 (MQ=255)

                                                                                          aGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATc                                           <  2:2491073/140‑1 (MQ=255)

                                                                                            cccACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATcca                                         <  2:1871718/140‑1 (MQ=255)

                                                                                            cccACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATcca                                         >  2:2655908/1‑140 (MQ=255)

                                                                                            cccACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATcca                                         >  1:406322/1‑140 (MQ=255)

                                                                                            cccACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATcca                                         >  2:1702378/1‑140 (MQ=255)

                                                                                            cccACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATcca                                         >  1:1982864/1‑140 (MQ=255)

                                                                                            cccACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATcca                                         >  1:618003/1‑140 (MQ=255)

                                                                                             ccaccaGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATccac                                        >  1:658280/1‑140 (MQ=255)

                                                                                              caccaGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATccacc                                       <  1:399919/140‑1 (MQ=255)

                                                                                              caccaGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATccacc                                       <  1:2400652/140‑1 (MQ=255)

                                                                                                  aGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAGGGTCACATTGCCCTTCTCGCACTCATCCACCAGCa                                   <  1:321566/140‑1 (MQ=255)

                                                                                                  aGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCa                                   <  2:2513918/140‑1 (MQ=255)

                                                                                                      gcgATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTc                               >  1:1128619/1‑140 (MQ=255)

                                                                                                      gcgATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTc                               >  1:2550383/1‑140 (MQ=255)

                                                                                                      gcgATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTc                               >  1:365252/1‑140 (MQ=255)

                                                                                                       cgATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTc                                              <  2:1457069/124‑1 (MQ=255)

                                                                                                       cgATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTc                                              >  1:1457069/1‑124 (MQ=255)

                                                                                                         aTGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGAc                            <  1:224904/140‑1 (MQ=255)

                                                                                                            aCCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAAt                         <  1:473365/140‑1 (MQ=255)

                                                                                                               aGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATctg                      <  1:983445/140‑1 (MQ=255)

                                                                                                               aGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATctg                      <  2:2550383/140‑1 (MQ=255)

                                                                                                                gCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATctgc                     <  2:537947/140‑1 (MQ=255)

                                                                                                                    ttCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATCTGCTgcg                 >  1:2152892/1‑140 (MQ=255)

                                                                                                                     tCGCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCTCATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATCTGCTgcgc                <  2:2356830/140‑1 (MQ=255)

                                                                                                                       gCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATCTGCTGCGCgg              <  2:2384377/140‑1 (MQ=255)

                                                                                                                       gCAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATCTGCTGCGCgg              >  1:2384377/1‑140 (MQ=255)

                                                                                                                        cAACCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATCTGCTGCGCGGa             <  2:816909/140‑1 (MQ=255)

                                                                                                                          aCCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATCTGCTGCGCGGAGt           <  1:432281/140‑1 (MQ=255)

                                                                                                                          aCCGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATCTGCTGCGCGGAGt           <  2:1716650/140‑1 (MQ=255)

                                                                                                                            cGACAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATCTGCTGCGCGGAGTCa         <  1:1442463/140‑1 (MQ=255)

                                                                                                                              aCAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATCTGCTgcg                 <  2:731824/130‑1 (MQ=255)

                                                                                                                              aCAGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATCTGCTGCGCGGAGTCATc       >  1:548611/1‑140 (MQ=255)

                                                                                                                                aGTCATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATCTGCTGCGCGGAGTCATCGc     <  2:1982864/140‑1 (MQ=255)

                                                                                                                                   cATGCC‑‑‑‑‑TTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATCTGCTGCGCGGAGTCATCGCaga  <  1:78768/140‑1 (MQ=255)

ACCAGACCCGCGCGGGTCGGCAGCACGTTGAGGCCAAATTGTTCGGCAATCTTATAACCAAACGGCGACGCGCCCAGCCCCGGCATTGACAGCCCACCAGTCGCGATGACCAGCTTTTCGCAACCGACAGTCATGCC‑‑‑‑‑GTTCAGATCAAGCGTGAAGCCTGTTTCATCCTTCGCCACACTCAGCACTTCGCTACGCAATCTGAAGGTCACATTGCCCTTCTCGCACTCATCCACCAGCATGTCGACAATCTGCTGCGCGGAGTCATCGCAGA  >  NC_000913/3636836‑3637106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A