Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F73 I1 R1	37	152.5	5346736	99.2%	5303962	139.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,733,471	C→A	P424Q (CCG→CAG)	xylG →	xylose ABC transporter ATP binding subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,733,471	0	C	A	100.0%	513.4 / NA	143	P424Q (CCG→CAG)	xylG	xylose ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (60/83); total (60/83)

Only 100 of 152 total aligned reads displayed.

GCGGCAGAGCAAAAATGTATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCT  >  NC_000913/3733335‑3733606

gcgGCAGAGCAAAAATGTATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCagcg                                                                                                                                      <  1:939036/140‑1 (MQ=255)

 cgGCAGAGCAAAAATGTATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAgcgc                                                                                                                                     >  1:803147/1‑140 (MQ=255)

 cgGCAGAGCAAAAATGTATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAgcgc                                                                                                                                     >  2:1925080/1‑140 (MQ=255)

 cgGCAGAGCAAAAATGTATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAgcgc                                                                                                                                     <  1:2321393/140‑1 (MQ=255)

 cgGCAGAGCAAAAATGTATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAgcgc                                                                                                                                     >  1:1983849/1‑140 (MQ=255)

      gagCAAAAATGTATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGcattct                                                                                                                                <  1:209531/140‑1 (MQ=255)

         cAAAAATGTATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGcattctcat                                                                                                                             <  1:2033241/140‑1 (MQ=255)

                 tATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCGGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTtgatg                                                                                                                     >  2:2069256/1‑140 (MQ=255)

                 tATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTtgatg                                                                                                                     <  2:1039116/140‑1 (MQ=255)

                 tATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTtgatg                                                                                                                     >  1:311061/1‑140 (MQ=255)

                   ttCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGaa                                                                                                                   >  2:865852/1‑140 (MQ=255)

                   ttCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGaa                                                                                                                   <  2:674138/140‑1 (MQ=255)

                   ttCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGaa                                                                                                                   <  1:1482732/140‑1 (MQ=255)

                   ttCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGaa                                                                                                                   <  1:1037361/140‑1 (MQ=255)

                      tGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAAccc                                                                                                                >  2:1085872/1‑140 (MQ=255)

                      tGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAAccc                                                                                                                >  2:1128902/1‑140 (MQ=255)

                      tGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGATATTGGACGATTGAGCGGCGGCAATCAGCAAAAAGCGATACTCGATCGCTGTCTGTTACTTAACCAGCGCATTCTCATTATTGATGAAccc                                                                                                                >  2:1312742/1‑140 (MQ=255)

                       ggAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACcca                                                                                                               >  1:1682504/1‑140 (MQ=255)

                        gAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTtgat                                                                                                                      >  1:1570636/1‑132 (MQ=255)

                        gAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTtgat                                                                                                                      <  2:1570636/132‑1 (MQ=255)

                        gAATCAATCCAGCAAATCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCCAAAAGCGATCCTCGCTGGCTGTCTGTTACTTAGACAGCGCATTCTTATTCTTGATGAACccac                                                                                                              >  2:664693/1‑140 (MQ=255)

                         aatcaatcCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACccacc                                                                                                             <  1:2189144/140‑1 (MQ=255)

                         aatcaatcCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACccacc                                                                                                             <  1:1987598/140‑1 (MQ=255)

                          atcaatcCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACccacca                                                                                                            <  2:2244696/140‑1 (MQ=255)

                           tcaatcCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAg                                                                                                           >  1:2071916/1‑140 (MQ=255)

                             aatcCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAggg                                                                                                         >  1:2543505/1‑140 (MQ=255)

                             aatcCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAggg                                                                                                         >  2:2462717/1‑140 (MQ=255)

                               tcCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGt                                                                                                       >  2:1107408/1‑140 (MQ=255)

                               tcCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGt                                                                                                       >  1:795254/1‑140 (MQ=255)

                                  aGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATc                                                                                                    >  1:2111009/1‑140 (MQ=255)

                                    cAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGaa                                                                                                                   >  1:2236729/1‑123 (MQ=255)

                                    cAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCACTCTCATTCTTGATGAACCCACCAGGGGTATCGa                                                                                                  >  2:1942009/1‑140 (MQ=255)

                                       cTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGatat                                                                                               >  1:1151206/1‑140 (MQ=255)

                                        tCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATAtt                                                                                              <  1:855581/140‑1 (MQ=255)

                                            aGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGgcg                                                                                          <  1:2585402/140‑1 (MQ=255)

                                            aGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGgcg                                                                                          <  1:1728793/140‑1 (MQ=255)

                                            aGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGgcg                                                                                          <  1:625286/140‑1 (MQ=255)

                                            aGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGgcg                                                                                          <  2:168369/140‑1 (MQ=255)

                                              ttAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGcgcg                                                                                        <  1:2649496/140‑1 (MQ=255)

                                              ttAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGcgcg                                                                                        <  1:2664210/140‑1 (MQ=255)

                                              ttAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGcgcg                                                                                        <  2:1295206/140‑1 (MQ=255)

                                              ttAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGcgcg                                                                                        <  1:2230457/140‑1 (MQ=255)

                                              ttAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGcgcg                                                                                        <  2:365817/140‑1 (MQ=255)

                                              ttAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAACGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATCAACCCACCAGGGGTATCGATATTGGcgcg                                                                                        <  2:2573339/140‑1 (MQ=255)

                                                 aaaCGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGaaa                                                                                     >  1:2078120/1‑140 (MQ=255)

                                                      tcgtcCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACga                                                                                >  1:287475/1‑140 (MQ=255)

                                                       cgtcCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACgag                                                                               <  1:265030/140‑1 (MQ=255)

                                                        gtcCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACgaga                                                                              >  2:2657739/1‑140 (MQ=255)

                                                           ccccGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCt                                                                           >  1:1598563/1‑140 (MQ=255)

                                                               gACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACaa                                                                       <  2:2615136/140‑1 (MQ=255)

                                                               gACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACaa                                                                       <  1:1712536/140‑1 (MQ=255)

                                                               gACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACaa                                                                       <  1:2214836/140‑1 (MQ=255)

                                                               gACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACaa                                                                       <  2:2248552/140‑1 (MQ=255)

                                                                    tGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAaattaa                                                                  >  2:1744977/1‑140 (MQ=255)

                                                                    tGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAaattaa                                                                  >  1:2312535/1‑140 (MQ=255)

                                                                           ggACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCa                                                           >  2:1642785/1‑140 (MQ=255)

                                                                             aCGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAAc                                                         <  1:744056/140‑1 (MQ=255)

                                                                             aCGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAAc                                                         <  1:1744977/140‑1 (MQ=255)

                                                                              cGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACt                                                        >  1:800476/1‑140 (MQ=255)

                                                                               gTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCa                                                           >  2:293866/1‑136 (MQ=255)

                                                                                tttGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAaatt                                                                    >  2:795632/1‑126 (MQ=255)

                                                                                  tGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTGCAAATTAATTAACCAACTCGTc                                                    <  2:2365195/140‑1 (MQ=255)

                                                                                     gcggcgGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCcag                                                 <  2:800476/140‑1 (MQ=255)

                                                                                       ggcggcAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCcagca                                               <  1:1520895/140‑1 (MQ=255)

                                                                                         cggcAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAgg                                             >  1:926914/1‑140 (MQ=255)

                                                                                         cggcAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAgg                                             <  1:1646019/140‑1 (MQ=255)

                                                                                           gcAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGt                                           >  2:31555/1‑140 (MQ=255)

                                                                                           gcAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGt                                           >  1:387847/1‑140 (MQ=255)

                                                                                             aaTCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTAt                                         <  1:332334/140‑1 (MQ=255)

                                                                                             aaTCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTAt                                         <  2:2111009/140‑1 (MQ=255)

                                                                                              aTCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTAtt                                        <  1:582763/140‑1 (MQ=255)

                                                                                               tCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTg                                       <  2:2364919/140‑1 (MQ=255)

                                                                                                  gCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCg                                    <  1:724715/140‑1 (MQ=255)

                                                                                                  gCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCACTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCg                                    <  1:1942009/140‑1 (MQ=255)

                                                                                                   cAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGt                                   <  2:748009/140‑1 (MQ=255)

                                                                                                     aaaaGCGATCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCATGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTa                                 <  2:2486297/140‑1 (MQ=255)

                                                                                                            aTCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCAt                          <  1:2090222/140‑1 (MQ=255)

                                                                                                            aTCCTCGCTCGCTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCAt                          <  1:865852/140‑1 (MQ=255)

                                                                                                                tcgctcgcTGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATctct                      <  2:75789/140‑1 (MQ=255)

                                                                                                                   ctcgctGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTcc                   >  2:163035/1‑140 (MQ=255)

                                                                                                                   ctcgctGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTcc                   >  1:1784548/1‑140 (MQ=255)

                                                                                                                     cgctGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGa                 <  1:1269085/140‑1 (MQ=255)

                                                                                                                     cgctGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGa                 <  2:487297/140‑1 (MQ=255)

                                                                                                                     cgctGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGa                 <  2:1598563/140‑1 (MQ=255)

                                                                                                                     cgctGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGa                 <  1:2385834/140‑1 (MQ=255)

                                                                                                                     cgctGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGa                 <  1:31555/140‑1 (MQ=255)

                                                                                                                     cgctGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGa                 <  2:2022042/140‑1 (MQ=255)

                                                                                                                      gctGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGaa                <  1:57355/140‑1 (MQ=255)

                                                                                                                      gctGTCTGTTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGaa                <  2:1151206/140‑1 (MQ=255)

                                                                                                                       ctgtctgtTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAAt               >  2:2587100/1‑140 (MQ=255)

                                                                                                                       ctgtctgtTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGGATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAAt               >  1:1333546/1‑140 (MQ=255)

                                                                                                                        tttctgtTACTTAACCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAAtt              <  2:307920/138‑1 (MQ=255)

                                                                                                                                    aaCCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCt  <  2:1980052/140‑1 (MQ=255)

                                                                                                                                    aaCCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCt  >  1:1039536/1‑140 (MQ=255)

                                                                                                                                    aaCCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCt  <  1:1107408/140‑1 (MQ=255)

                                                                                                                                    aaCCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCt  <  2:387847/140‑1 (MQ=255)

                                                                                                                                    aaCCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCt  >  1:627395/1‑140 (MQ=255)

                                                                                                                                    aaCCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCt  <  2:1039536/140‑1 (MQ=255)

                                                                                                                                    aaCCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCt  <  1:2587100/140‑1 (MQ=255)

                                                                                                                                    aaCCAGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCt  <  2:1983849/140‑1 (MQ=255)

GCGGCAGAGCAAAAATGTATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCT  >  NC_000913/3733335‑3733606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A