Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F73 I1 R1	37	152.5	5346736	99.2%	5303962	139.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,157,191	G→T	A114A (GCG→GCT)	argH →	argininosuccinate lyase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,157,191	0	G	T	100.0%	352.1 / NA	101	A114A (GCG→GCT)	argH	argininosuccinate lyase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (57/44); total (57/44)

Only 100 of 102 total aligned reads displayed.

CGCCAGGCCACAACAAATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCG  >  NC_000913/4157059‑4157327

cgcCAGGCCACAACAAATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGAcc                                                                                                                                   <  1:397557/140‑1 (MQ=255)

cgcCAGGCCACAACAAATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGAcc                                                                                                                                   <  2:11618/140‑1 (MQ=255)

cgcCAGGCCACAACAAATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGAcc                                                                                                                                   >  1:19241/1‑140 (MQ=255)

    aactcgcaacaaATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGaa                                                                                                                               >  1:756185/7‑140 (MQ=255)

     ggCCACAACAAATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGaaa                                                                                                                              <  2:197586/140‑1 (MQ=255)

     ggCCACAACAAATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGaaa                                                                                                                              <  2:2377146/140‑1 (MQ=255)

     ggCCACAACAAATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGaaa                                                                                                                              <  1:448611/140‑1 (MQ=255)

       ccACAACAAATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACt                                                                                                                            <  2:1717342/140‑1 (MQ=255)

        cacaACAAATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACtg                                                                                                                           <  2:126717/140‑1 (MQ=255)

        cacaACAAATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACtg                                                                                                                           <  2:19241/140‑1 (MQ=255)

        cacaACAAATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACtg                                                                                                                           <  2:1861228/140‑1 (MQ=255)

         acaacaAATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACtgt                                                                                                                          <  2:635514/140‑1 (MQ=255)

           aacaaATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTgtgg                                                                                                                        <  1:1915523/140‑1 (MQ=255)

           aacaaATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTgtgg                                                                                                                        >  2:1906993/1‑140 (MQ=255)

             caaATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTgtggtg                                                                                                                      <  1:1352429/140‑1 (MQ=255)

              aaaTCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGc                                                                                                                     <  2:1337514/140‑1 (MQ=255)

                aTCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCaa                                                                                                                   >  2:2450434/1‑140 (MQ=255)

                aTCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCaa                                                                                                                   >  2:1103456/1‑140 (MQ=255)

                    ttGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGAt                                                                                                               >  2:1968874/1‑140 (MQ=255)

                     tGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATa                                                                                                              <  1:1906993/140‑1 (MQ=255)

                       aaaGCGACGCCGAAGA‑ATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCg                                                                                                           >  2:145571/1‑140 (MQ=255)

                            gACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTa                                                                                                        >  2:2283409/1‑139 (MQ=255)

                            gACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTa                                                                                                        <  1:2283409/139‑1 (MQ=255)

                              cGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCg                                                                                                     >  1:382412/1‑140 (MQ=255)

                              cGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCg                                                                                                     >  2:1226777/1‑140 (MQ=255)

                                   aaGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTa                                                                                                >  1:778355/1‑140 (MQ=255)

                                     agaatCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACt                                                                                              <  1:145571/137‑1 (MQ=255)

                                          ccATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACgg                                                                                         >  1:36080/1‑140 (MQ=255)

                                              aGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTaa                                                                                     >  2:1888405/1‑140 (MQ=255)

                                                cTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAAcc                                                                                   >  1:2011358/1‑140 (MQ=255)

                                                cTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAAcc                                                                                   >  1:229960/1‑140 (MQ=255)

                                                cTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAAcc                                                                                   >  1:1141626/1‑140 (MQ=255)

                                                  gggTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCgg                                                                                 >  2:2213561/1‑140 (MQ=255)

                                                   ggTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGc                                                                                >  1:1567268/1‑140 (MQ=255)

                                                   ggTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGc                                                                                >  2:1406709/1‑140 (MQ=255)

                                                   ggTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGc                                                                                >  2:557082/1‑140 (MQ=255)

                                                   ggTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGc                                                                                >  2:515195/1‑140 (MQ=255)

                                                   ggTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGc                                                                                >  1:2476919/1‑140 (MQ=255)

                                                   ggTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGc                                                                                >  2:2477658/1‑140 (MQ=255)

                                                   ggTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGc                                                                                >  1:1602560/1‑140 (MQ=255)

                                                   ggTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGc                                                                                >  2:2233907/1‑140 (MQ=255)

                                                   ggTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGc                                                                                >  1:2317930/1‑140 (MQ=255)

                                                    gTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCa                                                                               >  1:1355248/1‑140 (MQ=255)

                                                     tGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAg                                                                              <  2:1141626/140‑1 (MQ=255)

                                                               aCTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCgg                                                                    >  2:2245298/1‑140 (MQ=255)

                                                                 tGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGgcg                                                                  <  2:2106536/140‑1 (MQ=255)

                                                                 tGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGgcg                                                                  <  1:1360473/140‑1 (MQ=255)

                                                                  gATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGgcgc                                                                 >  1:2476300/1‑140 (MQ=255)

                                                                  gATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGgcgc                                                                 <  2:778355/140‑1 (MQ=255)

                                                                  gATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGgcgc                                                                 >  1:2159765/1‑140 (MQ=255)

                                                                   aTCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCt                                                                <  2:1441398/140‑1 (MQ=255)

                                                                     cGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCtgg                                                              >  2:508963/1‑140 (MQ=255)

                                                                           aGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGGAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGaaa                                                        >  2:1497952/1‑140 (MQ=255)

                                                                             tGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGgcg                                                                  >  2:1672052/1‑128 (MQ=255)

                                                                             tGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGgcg                                                                  <  1:1672052/128‑1 (MQ=255)

                                                                             tGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAAcc                                                      >  2:48001/1‑140 (MQ=255)

                                                                             tGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAAcc                                                      >  1:389320/1‑140 (MQ=255)

                                                                               ggCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGc                                                    >  2:1855797/1‑140 (MQ=255)

                                                                                gCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGca                                                   >  1:925614/1‑140 (MQ=255)

                                                                                gCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGca                                                   <  2:1355248/140‑1 (MQ=255)

                                                                                gCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGca                                                   <  1:1628983/140‑1 (MQ=255)

                                                                                  cAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGcaca                                                 >  1:27776/1‑140 (MQ=255)

                                                                                   aGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACaa                                                <  1:557082/140‑1 (MQ=255)

                                                                                     ttAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACaaaa                                              >  2:2183878/1‑140 (MQ=255)

                                                                                     ttAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACaaaa                                              >  2:641504/1‑140 (MQ=255)

                                                                                       aGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACa                                            >  1:1043131/1‑140 (MQ=255)

                                                                                          cAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATc                                         >  1:120078/1‑140 (MQ=255)

                                                                                              aaGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAGCAATCAGGa                                     <  2:1980571/140‑1 (MQ=255)

                                                                                               aGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGAc                                    >  1:1598993/1‑140 (MQ=255)

                                                                                               aGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGAc                                    <  1:307719/140‑1 (MQ=255)

                                                                                                   gCATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCgg                                <  2:1479978/140‑1 (MQ=255)

                                                                                                    cATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGt                               <  2:120078/140‑1 (MQ=255)

                                                                                                    cATACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGt                               <  1:1226777/140‑1 (MQ=255)

                                                                                                     aTACCGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTa                              <  1:2450434/140‑1 (MQ=255)

                                                                                                        ccGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATg                           <  1:1494683/140‑1 (MQ=255)

                                                                                                        ccGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATg                           <  2:1780407/140‑1 (MQ=255)

                                                                                                        ccGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATg                           <  1:632985/140‑1 (MQ=255)

                                                                                                         cGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGc                          >  1:2331049/1‑140 (MQ=255)

                                                                                                         cGGGCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGc                          >  1:364268/1‑140 (MQ=255)

                                                                                                          gggCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGcc                         <  2:1598993/140‑1 (MQ=255)

                                                                                                           ggCGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCa                        >  1:2615566/1‑140 (MQ=255)

                                                                                                             cGTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAgg                      <  2:229960/140‑1 (MQ=255)

                                                                                                              gTAGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGt                     >  1:1885325/1‑140 (MQ=255)

                                                                                                                aGCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTa                   <  2:382412/140‑1 (MQ=255)

                                                                                                                 gCCGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTac                  >  2:2020451/1‑140 (MQ=255)

                                                                                                                  ccGTAATGATCAGGTAGCTTCTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAATACAATCAGGACGCGGTAATGCCAGGTTaca                 <  1:2480972/140‑1 (MQ=255)

                                                                                                                  ccGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTaca                 <  1:2457477/140‑1 (MQ=255)

                                                                                                                  ccGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTaca                 <  2:573719/140‑1 (MQ=255)

                                                                                                                  ccGTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTaca                 <  2:27776/140‑1 (MQ=255)

                                                                                                                    gTAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACt               <  2:2402499/140‑1 (MQ=255)

                                                                                                                     tAATGATCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTc              >  1:1571915/1‑140 (MQ=255)

                                                                                                                          aTCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAgg                      >  1:808719/1‑127 (MQ=255)

                                                                                                                          aTCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAgg                      <  2:808719/127‑1 (MQ=255)

                                                                                                                          aTCAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTg         >  1:1166698/1‑140 (MQ=255)

                                                                                                                            cAGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCa       >  1:1249270/1‑140 (MQ=255)

                                                                                                                             aGGTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCaa      <  2:756185/140‑1 (MQ=255)

                                                                                                                               gTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAAcg    >  1:155608/1‑140 (MQ=255)

                                                                                                                               gTAGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAAcg    >  1:1871640/1‑140 (MQ=255)

                                                                                                                                 aGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGGGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAAcgcg  >  1:2235602/1‑140 (MQ=255)

                                                                                                                                 aGCTACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAAcgcg  >  1:820778/1‑140 (MQ=255)

CGCCAGGCCACAACAAATCCTTGAAAGCGACGCCGAAGATATCCATAGCTGGGTGGAAGGCAAACTGATCGACAAAGTGGGCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCG  >  NC_000913/4157059‑4157327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A