Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 124 90.1 3003320 99.2% 2979293 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 764,359 C→T A60A (GCC→GCT)  sucD → succinyl‑CoA synthetase subunit alpha

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913764,3590CT100.0% 359.8 / NA 102A60A (GCC→GCT) sucDsuccinyl‑CoA synthetase subunit alpha
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (61/41);  total (61/41)

Only 100 of 103 total aligned reads displayed.

ACCGGTAGCCAGGGGACTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCCGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACGCTGGA  >  NC_000913/764228‑764490
                                                                                                                                   |                                                                                                                                   
aCCGGTAGCCAGGGGACTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTtgctgc                                                                                                                             >  1:1351623/1‑140 (MQ=255)
    gTAGCCAGGGGACTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACt                                                                                                                         >  2:946995/1‑140 (MQ=255)
    gTAGCCAGGGGACTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACt                                                                                                                         >  2:1624/1‑140 (MQ=255)
    gTAGCCAGGGGACTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACt                                                                                                                         <  1:169181/140‑1 (MQ=255)
     tAGCCAGGGGACTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTg                                                                                                                        >  1:1073756/1‑140 (MQ=255)
     tAGCCAGGGGACTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTg                                                                                                                        >  2:1475613/1‑140 (MQ=255)
     tAGCCAGGGGACTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTg                                                                                                                        >  2:484318/1‑140 (MQ=255)
     tAGCCAGGGGACTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTg                                                                                                                        >  1:149949/1‑140 (MQ=255)
        ccAGGGGACTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGgcg                                                                                                                     >  2:189802/1‑140 (MQ=255)
              gACTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCg                                                                                                               <  2:492513/140‑1 (MQ=255)
              gACTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGCAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCg                                                                                                               <  2:1046985/140‑1 (MQ=255)
              gACTTGCCGCTCAGAACAGGCCATTGCATACGGCACTAAACTGGTTGGCGGCGTAACCCCAGGTAAGGGCGTCCCCGCCCTCCCCGCCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCg                                                                                                               <  2:1308795/140‑1 (MQ=255)
               aaagtCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGc                                                                                                              >  2:662005/5‑140 (MQ=255)
               aCTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGc                                                                                                              >  2:325750/1‑140 (MQ=255)
               aCTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGc                                                                                                              >  1:1377842/1‑140 (MQ=255)
                cTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCt                                                                                                             <  1:752418/140‑1 (MQ=255)
                 tttCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTACCCCCAGGTAAAGGCGGCACCCCCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCtt                                                                                                            <  2:54114/140‑1 (MQ=255)
                 tttCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCAGCCACTGGCGCTACCGCtt                                                                                                            >  1:1122430/1‑140 (MQ=255)
                 tttCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGGGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCtt                                                                                                            >  1:1094252/1‑140 (MQ=255)
                    ccACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTg                                                                                                         <  1:571076/140‑1 (MQ=255)
                     cACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGt                                                                                                        <  1:496836/140‑1 (MQ=255)
                      aCTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGtt                                                                                                       <  1:676208/140‑1 (MQ=255)
                          aGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCt                                                                                                   >  2:1273856/1‑140 (MQ=255)
                           gAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTACCCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTa                                                                                                  <  1:1428845/140‑1 (MQ=255)
                           gAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTa                                                                                                  <  2:491905/140‑1 (MQ=255)
                           gAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTa                                                                                                  <  2:1136511/140‑1 (MQ=255)
                           gAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTa                                                                                                  <  1:964477/140‑1 (MQ=255)
                           gAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTa                                                                                                  <  1:234557/140‑1 (MQ=255)
                            aaCAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTAc                                                                                                 >  2:415343/1‑140 (MQ=255)
                                 gCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTAcc                                                                                            >  2:1263891/1‑140 (MQ=255)
                                   cATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAg                                                                                          <  2:912139/140‑1 (MQ=255)
                                     ttGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCa                                                                                        <  2:917862/140‑1 (MQ=255)
                                     ttGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCa                                                                                        <  2:591638/140‑1 (MQ=255)
                                      tGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAATGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCAc                                                                                       >  2:81192/1‑140 (MQ=255)
                                      tGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCAc                                                                                       >  2:1051537/1‑140 (MQ=255)
                                      tGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCAc                                                                                       >  1:1285636/1‑140 (MQ=255)
                                      tGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCAc                                                                                       >  1:955564/1‑140 (MQ=255)
                                      tGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCAc                                                                                       >  2:1073365/1‑140 (MQ=255)
                                      tGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCAc                                                                                       >  1:147925/1‑140 (MQ=255)
                                      tGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCAc                                                                                       >  1:1406860/1‑140 (MQ=255)
                                      tGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCAc                                                                                       >  1:1260728/1‑140 (MQ=255)
                                             ggCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTg                                                                                >  2:453236/1‑140 (MQ=255)
                                              gCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGc                                                                               >  1:1088314/1‑140 (MQ=255)
                                              gCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGc                                                                               >  2:703935/1‑140 (MQ=255)
                                               cACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCa                                                                              >  2:121314/1‑140 (MQ=255)
                                                  tAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAg                                                                           >  1:172393/1‑140 (MQ=255)
                                                  tAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAg                                                                           >  1:730704/1‑140 (MQ=255)
                                                  tAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAg                                                                           >  1:401227/1‑140 (MQ=255)
                                                     aaTGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACt                                                                        <  1:29333/140‑1 (MQ=255)
                                                     aaTGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACt                                                                        <  2:955564/140‑1 (MQ=255)
                                                        ggTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCa                                                                     <  1:376910/140‑1 (MQ=255)
                                                         gTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCAt                                                                    >  1:273142/1‑140 (MQ=255)
                                                              cggcgTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTgg                                                               >  1:1153081/1‑140 (MQ=255)
                                                              cggcgTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTgg                                                               >  1:1013135/1‑140 (MQ=255)
                                                                   tAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGcc                                                          >  2:972183/1‑140 (MQ=255)
                                                                    aaCCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCa                                                         <  1:703935/140‑1 (MQ=255)
                                                                           ggTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGc                                                  >  1:808272/1‑140 (MQ=255)
                                                                                aGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCa                                             >  2:501681/1‑140 (MQ=255)
                                                                                     gcACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGTTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCaaa                                        >  2:51920/1‑140 (MQ=255)
                                                                                     gcACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCaaa                                        <  2:1377842/140‑1 (MQ=255)
                                                                                     gcACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCaaa                                        <  1:81192/140‑1 (MQ=255)
                                                                                      caccacCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAAc                                       >  1:987793/1‑140 (MQ=255)
                                                                                      caccacCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAAc                                       >  2:188064/1‑140 (MQ=255)
                                                                                      caccacCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAAc                                       >  1:116631/1‑140 (MQ=255)
                                                                                      caccacCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAAc                                       >  1:1151614/1‑140 (MQ=255)
                                                                                         cacccaccTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGa                                    <  1:415343/140‑1 (MQ=255)
                                                                                           cccaccTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGAtt                                  <  2:527319/140‑1 (MQ=255)
                                                                                                cTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCAc                             >  1:10610/1‑140 (MQ=255)
                                                                                                cTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCAc                             <  2:1465066/140‑1 (MQ=255)
                                                                                                cTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCAc                             <  1:189802/140‑1 (MQ=255)
                                                                                                 tCGGCCTTGCGGGGTTCAACTGCTGGCGTGAAGCTTTTTCCGCCACTGGCGCTACCGCTTCTGGTATCTTCGTACCCGCAACGGTCTGCAAAGACTCCAATCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCAcc                            <  2:1260728/140‑1 (MQ=255)
                                                                                                 tCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCAcc                            <  1:1475613/140‑1 (MQ=255)
                                                                                                    gCCTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATc                         <  1:1267931/140‑1 (MQ=255)
                                                                                                     ccTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCa                        >  1:1458886/1‑140 (MQ=255)
                                                                                                      cTGCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCAc                       <  1:325750/140‑1 (MQ=255)
                                                                                                        gCCGGTGTTCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTg                     >  2:1086842/1‑140 (MQ=255)
                                                                                                               ttCAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCAt              >  1:898226/1‑140 (MQ=255)
                                                                                                                 cAACACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATcc            <  1:1020397/140‑1 (MQ=255)
                                                                                                                  aaCACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATccc           <  2:1013135/140‑1 (MQ=255)
                                                                                                                  aaCACCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATccc           <  2:1153081/140‑1 (MQ=255)
                                                                                                                   acacCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCg          >  1:263367/1‑140 (MQ=255)
                                                                                                                     acCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGAc        <  1:1073365/140‑1 (MQ=255)
                                                                                                                     acCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGAc        <  1:965083/140‑1 (MQ=255)
                                                                                                                     acCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGAc        <  2:1285636/140‑1 (MQ=255)
                                                                                                                     acCGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGAc        <  1:1175262/140‑1 (MQ=255)
                                                                                                                      ccGTGCGTGAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACg       <  1:188064/140‑1 (MQ=255)
                                                                                                                       cgtgcgtgAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACGc      <  2:1351623/140‑1 (MQ=255)
                                                                                                                         tgcgtgAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACGCTg    >  1:1301613/1‑140 (MQ=255)
                                                                                                                         tgcgtgAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACGCTg    >  1:1096940/1‑140 (MQ=255)
                                                                                                                         tgcgtgAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACGCTg    >  2:911816/1‑140 (MQ=255)
                                                                                                                         tgcgtgAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACGCTg    >  1:3350/1‑140 (MQ=255)
                                                                                                                         tgcgtgAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACGCTg    >  2:1234113/1‑140 (MQ=255)
                                                                                                                         tgcgtgAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACGCTg    >  2:1369310/1‑140 (MQ=255)
                                                                                                                         tgcgtgAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACGCTg    >  1:156907/1‑140 (MQ=255)
                                                                                                                         tgcgtgAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACGCTg    >  1:377467/1‑140 (MQ=255)
                                                                                                                         tgcgtgAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACGCTg    >  2:37664/1‑140 (MQ=255)
                                                                                                                         tgcgtgAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCAACGCTg    >  2:1140734/1‑140 (MQ=255)
                                                                                                                         ggcgtgAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGGAGGCATCAAACTGATTATCACCATCACT‑AAGGCATCCCGACGCTgg   >  2:948812/2‑140 (MQ=255)
                                                                                                                          gcgtgAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACGCTgg   <  1:972183/140‑1 (MQ=255)
                                                                                                                           cgtgAAGCTGTTGCTGCCACTGGCGCTACCGCTTCTTTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACGCTGGa  >  1:377582/1‑140 (MQ=255)
                                                                                                                                   |                                                                                                                                   
ACCGGTAGCCAGGGGACTTTCCACTCAGAACAGGCCATTGCATACGGCACTAAAATGGTTGGCGGCGTAACCCCAGGTAAAGGCGGCACCACCCACCTCGGCCTGCCGGTGTTCAACACCGTGCGTGAAGCCGTTGCTGCCACTGGCGCTACCGCTTCTGTTATCTACGTACCAGCACCGTTCTGCAAAGACTCCATTCTGGAAGCCATCGACGCAGGCATCAAACTGATTATCACCATCACTGAAGGCATCCCGACGCTGGA  >  NC_000913/764228‑764490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A